Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species by Siddharth M. Chauhan, Omid Ardalani, Jason C. Hyun, Jonathan M. Monk, Patrick V. Phaneuf, Bernhard O. Palsson

“…By employing machine learning techniques to analyze 2,377 complete E. coli genomes, the study provides a detailed mapping of core, accessory, and rare genes. …”
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Epigenetic evolution and clinicopathological implications of distinct DNA methylation profiles in pancreatic ductal adenocarcinoma by Keiichiro Kitahama, Yu-Jui Ho, Kaishi Satomi, Takahiro Shibayama, Kiyotaka Nagahama, Kouki Ohtsuka, Hiroaki Ohnishi, Yoshihiro Sakamoto, Junji Shibahara, Akimasa Hayashi

“…We investigated intratumoral deoxyribonucleic acid methylation heterogeneity by analyzing 44 tumor samples and 5 normal samples from 6 cases of PDAC by using high-resolution methylation arrays. …”
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On the origin of non-specific binders isolated in the selection of phage display peptide libraries by Babak Bakhshinejad, Babak Bakhshinejad, Andreas Kjaer, Andreas Kjaer

“…This knowledge can finally provide a solid foundation for discovering promising target-specific binders in the evolutionary selection of phage display libraries.…”
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A multi-time scale charging load forecasting method for electric private cars based on an improved gravity model considering stochastic charging behavior by Xiaohong Dong, Ruize Wang, Xiaodan Yu

“…However, most current studies focus on short-term charging load prediction, and rarely analyze the differences in charging loads in different day types and seasons in future years. …”
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Retinoic acid regulates the proliferation, differentiation, and cell death of limb skeletal progenitors, contributing to establish the size and identity of the digits by Cristina Duarte-Olivenza, Goretti Moran, Juan M. Hurle, Juan A. Montero, Carlos I. Lorda-Diez

“…Abstract Background The development of the digits (fingers/toes) provides an excellent model for analyzing the molecular regulation of skeletal morphogenesis in vertebrates. …”
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Subject Modeling-Based Analysis of the Evolution and Intervention Strategies of Major Emerging Infectious Disease Events by Guo H, Zhao T, Zou Y, Zhang B, Cheng Y

“…This framework integrates three key factors—health transmission, perspective interaction, and risk perception—to analyze group perspective evolution, behavioral change, and virus transmission processes. …”
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Evolutionarily stable gene clusters shed light on the common grounds of pathogenicity in the Acinetobacter calcoaceticus-baumannii complex. by Bardya Djahanschiri, Gisela Di Venanzio, Jesus S Distel, Jennifer Breisch, Marius Alfred Dieckmann, Alexander Goesmann, Beate Averhoff, Stephan Göttig, Gottfried Wilharm, Mario F Feldman, Ingo Ebersberger

“…We delineate gene clusters in the type strain A. baumannii ATCC 19606 whose evolutionary conservation indicates a functional integration of the subsumed genes. …”
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A clustering-aided multi-agent deep reinforcement learning for multi-objective parallel batch processing machines scheduling in semiconductor manufacturing by Peng Zhang, Mengyu Jin, Ming Wang, Jie Zhang, Junjie He, Peng Zheng

“…Pioneer researches on multi-objective batch machines scheduling mainly focus on evolutionary algorithms, failing to meet the online scheduling demand. …”
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Scientific basis for predicting the spread of pests by A. Fedorenko, O. Borzykh, V. Fedorenko, V. Chaika, L. Yushchenko

“…Goal. To analyze the existing theories of mass reproduction of insects, to evaluate and test the established and newest methods of monitoring and prospects for their use in modern conditions of pest spread. …”
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An Examination of the Evolution of Green Industry Structure and Sustainable Cooperation Strategies Between China and the Visegrád Group: A Product Space Approach by Liping Qiu, Qianxue Chen, Xinzhe Zhu, Lihua Yang, Wenbo Gu

“…The analysis reveals the evolutionary patterns of the green industry and the collaborative transformation mechanisms between China and the V4 countries. …”
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Metabolic Syndrome: the Influence of Adipokines on the L-Arginine-NO Synthase-Nitric Oxide Signaling Pathway by L. A. Kuznetsova

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Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and Mortality. by Alexander M Kulminski, Liang He, Irina Culminskaya, Yury Loika, Yelena Kernogitski, Konstantin G Arbeev, Elena Loiko, Liubov Arbeeva, Olivia Bagley, Matt Duan, Arseniy Yashkin, Fang Fang, Mikhail Kovtun, Svetlana V Ukraintseva, Deqing Wu, Anatoliy I Yashin

“…This locus harbors an evolutionary conserved gene-desert region with non-coding intergenic sequences likely involved in regulation of protein-coding flanking genes ZEB2 and ACVR2A. …”
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Structural Insights into Mechanisms Underlying Mitochondrial and Bacterial Cytochrome c Synthases by Pema L. Childs, Ethan P. Lowder, Deanna L. Mendez, Shalon E. Babbitt, Amidala Martinie, Jonathan Q. Huynh, Robert G. Kranz

“…We propose a structural basis for release of the holocyt c product from HCCS based on in vitro studies and on cryoEM structures of the bacterial cyt c synthase (CcsBA) active site. We analyze the kinetoplastid mitochondrial synthase (KCCS), and hypothesize a molecular evolutionary path from mitochondrial endosymbiosis to the current HCCS.…”
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Comprehensive Morphometric Analysis of the Foramen Magnum: A Detailed Study with Multiple Parameters by Hussain Saheb Shaik, Indira Thatiparthi, Maruti Ram Annamaraju, Pandit Vinodh Bandela, Haseena Shaik

“…In addition, we investigated sexual dimorphism in FM dimensions and classified FM shapes to analyze their distribution. Methodology: A cross-sectional study of 100 dry skulls (60 male and 40 female) was conducted. …”
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Advances in orofacial pain research: a bibliometric analysis by Shuo Qin, Shuo Qin, Juan Liu, JiaXing Fan, Zhe Qin, Jing Jia

“…This study aims to systematically map the evolutionary trajectory of orofacial pain research from 2000 to 2024. …”
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Present and Future of the White‐Tailed Laurel Pigeon (Columba junoniae) on Gran Canaria Island by Gonzalo Albaladejo‐Robles, José Manuel Caballero Fernández, Yarci Acosta Santana

“…ABSTRACT Due to their evolutionary history and restricted distribution islands species are particularly vulnerable to human impacts and extinction. …”
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Unveiling the wheat-rust battleground: A transcriptomic journey by K.K. Chetan, Vaibhav Kumar Singh, Mohammad Waris Haider, Mahender Singh Saharan, Ravinder Kumar

“…Transcriptomics emerges as a powerful tool for analyzing gene activity at the molecular level. Over the last decade, this technique has transformed our comprehension of the wheat-rust interaction. …”
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Virtual water transfer patterns and water scarcity spillover risks of cities in the arid region of Northwest China by YANG Jingjing, MA Zhong, MA Weijing, JIAO Zhipeng, MAO Ting, WANG Ting

“…Future research should incorporate multidimensional factors such as climate change, economic development, and policy shifts to further elucidate the interdependence and evolutionary patterns of water resources across regions. …”
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Characteristics and association mechanisms of the transition between dominant morphology and recessive morphology of rural settlements by ZHANG Bailin, ZHANG Xinyu, ZHAO Yining, LIU Hongwu

“…[Methods] This paper draws on the “conflict-coordination” theoretical model of regional land use, and introduces the coupling coordination model, Pearson correlation coefficient and grey correlation degree model to analyze the internal correlation mechanism of the transition of rural settlements in Tianjin from 1980 to 2020. …”
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Comparative analysis of codon usage patterns of FUT2 from different species by Chao Xu, Wenbin Bao, Shenglong Wu, Zhengchang Wu

“…Codon usage bias analysis can help to better understand the molecular mechanisms and evolutionary relationships of a particular gene. In order to understand the codon usage pattern of FUT2 gene, FUT2 gene coding sequences of nine species were selected from GenBank database for calculating the nucleotide composition (GC content) and genetic indexes including effective number of codons, relative synonymous codon usage and relative codon usage bias using R software, in order to analyze codon usage bias and base composition in FUT2 gene from different species. …”
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