Comparative transcriptome analysis reveals differences in immune responses to copper ions in Sepia esculenta under high-temperature conditions by Yancheng Zhao, Deyuan Chang, Yanxuan Zheng, Yuwei Zhang, Yongjie Wang, Xiaokai Bao, Guohua Sun, Yanwei Feng, Zan Li, Xiumei Liu, Jianmin Yang

“…In this study, we used transcriptomic techniques to investigate the differences in Cu exposure immune responses in S. esculenta larvae under different temperature conditions. …”
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The Characteristics and Functions of SSRs and SNPs Based on the Transcriptome of <i>Tuta absoluta</i> Exposed to Different Concentrations of Abamectin and Chlorantraniliprole by Fanxue Zhang, Meimei Mu, Zonglin Wang, Haoran Zhang, Yilan Song, Rong Xiao

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Agro-physiological and transcriptome profiling reveal key genes associated with potato tuberization under different nitrogen regimes in aeroponics. by Rasna Zinta, Jagesh Kumar Tiwari, Tanuja Buckseth, Umesh Goutam, Rajesh Kumar Singh, Ajay Kumar Thakur, Vinod Kumar, Shwetank Singh, Manoj Kumar

“…The phenotypic results confirmed that Kufri Pukhraj was more nitrogen use efficient compared to Kufri Jyoti, particularly under low nitrogen conditions. Additionally, transcriptome analysis produced high-quality data ( ≥ Q20), ranging from 4.35 to 5.46 Gb per sample. …”
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Transcriptomic Profiling Reveals Differences in Slow‐Twitch and Fast‐Twitch Muscles of a Cigarette Smoke‐Exposed Rat Model by Timothy K. H. Fung, Kwok Kuen Cheung, Xia Wang, Benson W. M. Lau, Shirley P. C. Ngai

“…This study aimed to elucidate the histomorphological, biochemical and transcriptomic changes induced by CS on both slow‐twitch and fast‐twitch muscles. …”
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Transcriptome Analysis Reveals the Molecular Mechanism of <i>Pseudomonas</i> with Different Adhesion Abilities on <i>Tilapia</i> Decay by Liumin Zhuang, Chen Song, Yunru Wei, Jinzhi Han, Li Ni, Chengxu Ruan, Wen Zhang

“…LP-3, with reduced adhesion ability after NaCl regulation, showed a diminished capacity to cause fish spoilage. Transcriptomics analysis was used to examine two <i>Pseudomonas</i> strains that exhibited different adhesion abilities, leading to the identification of an adhesion regulatory network involving flagellar assembly regulation, bacterial chemotaxis, quorum sensing, two-component systems, biofilm formation, and bacterial secretion systems. …”
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Transcriptome analysis of mammary epithelial cell between Sewa sheep and East FriEsian sheep from different localities by Rui Li, Junru Pan, Cheng Pan, Jingjing Li, Zhenzhen Zhang, Khuram Shahzad, Yu Sun, Quzhu Yixi, Wangjie Zhaxi, Haofeng Qing, Tianzeng Song, Wangsheng Zhao

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A Comparative Transcriptomic and Proteomic Analysis of the Pileus of <i>Agaricus bisporus</i> During Its Different Developmental Phases by Weilin Feng, Zier Guo, Qunli Jin, Yingyue Shen, Tingting Song, Mei Wang, Jun Zhang, Lijun Fan, Weiming Cai

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Transcriptome and chromatin accessibility landscape of ovarian development at different egg-laying stages in taihe black-bone silky fowls by Jingyi Zhang, Yong Cui, Jiming Ruan, Haiyan Zhu, Haiping Liang, Ji Cao, Qing Wei, Jianzhen Huang

“…This study aims to explore the ovarian development status, as well as the changes in the transcriptome and chromatin accessibility landscape at different egg-laying stages of SF, in order to reveal the epigenetic regulatory mechanisms underlying ovarian development in laying hens. …”
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Transcriptome and targeted metabolome analysis of lipid profiles, nutrients compositions and volatile compounds in longissimus dorsi of different pig breeds by Zhen Luo, Ting Lai, Yijia Fan, Chengbin Yu, Wei Li, Meng Li, Shenghui Lei, Jing Zhang, Weina Xu, Zhe Wang, Jianxiong Xu

“…Conclusion Our study provided new insights into potential mechanisms of IMF deposition, nutrients composition and volatile compounds of muscular tissues of different pig breeds.…”
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Bioactive Components and Color Variation Mechanism Among Three Differently Colored Peppers Based on Transcriptomics and Non-Targeted Metabolomics by Yunrong Mo, Wei Hua, Hong Cheng, Ruihao Zhang, Pingping Li, Minghua Deng

“…Here, we utilized three chili pepper varieties (CS03, CS29, and L816) at different developmental stages (young fruit stage, turning color stage, and mature stage) as research materials and integrated transcriptome and non-targeted metabolome analyses to explore the variation in bioactive components and color to explain the molecular regulatory mechanisms underlying different colors of chili peppers during the young fruit stage. …”
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Transcriptome Analysis Reveals Molecular Mechanisms of Melanin Synthesis in <i>Auricularia heimuer</i> Under Different Fermentation Times by Xiuge Yao, Jiechi Zhang, Chunge Sheng, Yan Guo, Chuang Han, Shuang Tian, Jianan Zhu, Xiaojia Zhang, Shuyang Zhou, Jianing Liu, Xiaodong Dai, Piqi Zhang, Bo Yin, Yinpeng Ma

“…The absorbance at 500 nm, melanin yield, and tyrosinase activity in the fermentation broth were assessed across different fermentation durations. Mycelia samples were gathered on the 4th (R1), 8th (R2), and 10th (R3) days of liquid fermentation for transcriptome sequencing. …”
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Integrated Multi-Tissue Lipidomics and Transcriptomics Reveal Differences in Lipid Composition Between Mashen and Duroc × (Landrace × Yorkshire) Pigs by Mingyue Shi, Wenxia Li, Shuai Yang, Qipin Lv, Jingxian Yang, Di Sun, Guanqing Yang, Yan Zhao, Wanfeng Zhang, Meng Li, Yang Yang, Chunbo Cai, Pengfei Gao, Xiaohong Guo, Bugao Li, Guoqing Cao

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DNA methylation dynamics play crucial roles in shaping the distinct transcriptomic profiles for different root-type initiation in rice by Wei Jiang, Zhou Zhou, Xiaoying Li, Yu Zhao, Shaoli Zhou

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Transcriptomic Differences Between Human Trabecular Meshwork Stem Cells and Trabecular Meshwork Cells Reveal Specific Biomarker Profiles by Rong Du, Ajay Kumar, Enzhi Yang, Jingxue Zhang, Ningli Wang, Yiqin Du

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Sea lice (Lepeophtheirus salmonis) life stage impacts atlantic salmon transcriptomic responses under different thermal profiles by Reza Ghanei-Motlagh, Reza Ghanei-Motlagh, Wenlong Cai, Jordan D. Poley, Shona K. Whyte, Amber F. Garber, Mark D. Fast

“…This study investigated global gene expression (transcriptomic) responses of the skin and head kidney of Atlantic salmon (Salmo salar) from different families following infestation at two distinct stages of sea lice, chalimus II and adult, under varying temperature conditions (10°C and 20°C). …”
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Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients by Yuan Guo, Xueqian Fu, Chong Sun, Chong Sun, Yifei Deng, Han Liu, Long Tong, Mi Kuang, Ning Tang, Wenying Yang, Xia Liu, Zexiong Chen

“…Zanthoxylum armatum is a widely distributed and economically important forest species in China that shows remarkable regional adaptability. However, adaptive differences under diverse environmental conditions and their molecular mechanisms have not been systematically studied.MethodsPlant materials of Z. armatum from three regions (Shandong, Chongqing, and Yunnan) representing different latitudinal backgrounds were cultivated under uniform conditions. …”
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Integrative Transcriptomic and Metabolomic Analysis Reveals Quinoa Leaf Response Mechanisms to Different Phosphorus Concentrations During Filling Stage by Hongxin Wang, Hanxue Li, Xiaorong Li, Qianchao Wang, Junna Liu, Ping Zhang, Heng Xie, Li Li, Peng Qin

“…Therefore, we conducted metabolome and transcriptome analyses on quinoa leaves during the filling stage, subjecting plants to different doses of phosphorus fertilizer. …”
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Metabolome and transcriptome analysis reveal the pigments biosynthesis pathways in different color fruit peels of Clausena lansium L. Skeels by Zhichang Zhao, Mark Owusu Adjei, Ruixiong Luo, Huaping Yu, Yali Pang, Jian Wang, Yu Zhang, Jun Ma, Aiping Gao

“…The coloration of the peels was attributed to significant differences in chlorophyll, carotenoid, and anthocyanin content between BP and PP.MethodsThis study investigates the biosynthetic metabolic activities in the brown and purple peels of Clausena lansium L. …”
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Identification and validation of reference genes for qRT-PCR analyses under different experimental conditions in Dendrobium nobile by Kaijie Li, Xianfen Deng, Yao Wu, Jinling Li, Mingjin Huang, Chunli Luo, Hualei Wang, Hongchang Liu, Dandan Li

“…In this study, eight genes were selected as the candidate RGs based on the transcriptome data from different tissues of D. nobile. …”
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Characterizing therapeutic effects of velvet antler using different omics strategies by Shang-Tse Ho, Ching-Yun Kuo, Ming-Ju Chen

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