Transcriptome Profiles of the Liver in Two Cold-Exposed Sheep Breeds Revealed Different Mechanisms and Candidate Genes for Thermogenesis by Dan Jiao, Kaixi Ji, Wenqiang Wang, Hu Liu, Jianwei Zhou, A. Allan Degen, Yunsheng Zhang, Ping Zhou, Guo Yang

“…In this study, the difference in the liver transcriptome between Altay and Hu ewe lambs was compared. …”
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Integrated transcriptomics and metabolomics analysis of volatiles and variations in carotenoid biosynthesis during different developmental stages of Camellia huana by Zhiping Chen, Yongxin Zhou, Xia Jiang, He Li, Xiaohui Liu, Lunxiu Deng, Gang Wang

“…In the present study, to better understand the regulatory mechanisms of carotenoids and volatile compounds in the petals of C. huana flowers of different colors, we used flowers obtained at different developmental periods of C. huana as the experimental materials and conducted metabolome and transcriptome analyses. …”
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Biological mechanism of sex differences in mental rotation: Evidence from multimodal MRI, transcriptomic and receptor/transporter data by Haixia Long, Hao Wu, Chaoliang Sun, Xinli Xu, Xu-Hua Yang, Jie Xiao, Mingqi Lv, Qiuju Chen, Ming Fan

Subjects: “…Sex difference…”
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A Transcriptomic Approach to Sex Differences in Calcific Aortic Valve Stenosis in Patients with a Tricuspid Aortic Valve by Emma Le Nezet, MSc, Rose Tam, MSc, Zhonglin Li, MSc, Nathalie Gaudreault, BSc, Patrick Mathieu, MD, MSc, Nancy Côté, PhD, Isabelle Guisle, PhD, Sébastien Thériault, MD, MSc, Yohan Bossé, PhD, Marie-Annick Clavel, DVM, PhD

“…We thus aim to assess the transcriptome of stenotic aortic valves according to patients’ sex. …”
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Transcriptome and Proteome Analyses Revealed Differences in JEV-Infected PK-15 Cells in Response to Ferroptosis Agonists and Antagonists by Xiaolong Zhou, Yiwei Chen, Xinyao Kang, Ayong Zhao, Songbai Yang

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Transcriptome and proteome of ovarian tissues revealed the differences in the ovaries of dairy goats during the breeding and non-breeding seasons by Chenbo Shi, Qingqing Liu, Wei Wang, Qiuya He, Jianqing Zhao, Fuhong Zhang, Lu Zhu, Jun Luo

“…Furthermore, ovarian differences were explored at the molecular level using transcriptomic and proteomic methodologies. …”
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Transcriptome immune-regulatory differences between leprosy patients and type 1 reaction patients, before onset of symptoms. by Wilian Correa-Macedo, Monica Dallmann-Sauer, Marianna Orlova, Jeremy Manry, Vinicius M Fava, Nguyen Thu Huong, Nguyen Ngoc Ba, Nguyen Van Thuc, Vu Hong Thai, Erwin Schurr

“…However, the cells of T1R patients displayed a transcriptomic immune response to M. leprae antigens that was significantly different from the one of cells from leprosy patients who remained T1R-free. …”
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Integrated transcriptomic and proteomic analyses provide insights into the biosynthesis of Lycii fructus polysaccharides from different cultivation regions by Limei Tong, Yinxiu Jiang, Xinrun Zhang, Xia Zhang, Yihao Zheng, Qiheng Zhao, Sheng Yu, Wenhua Zhang, Gang Ren, Zhanping Chen, Yuling Zhao, Sheng Guo, Hui Yan, Shulan Su, Yang Pan, Jin-ao Duan, Fang Zhang

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Integration of transcriptome and immunophenotyping data highlights differences in the pathogenetic kinetics of B cells across immune-mediated disease by Kazuhiko Yamamoto, Mineto Ota, Keishi Fujio, Yasuo Nagafuchi, Tomohisa Okamura, Saeko Yamada, Hirofumi Shoda, Takahiro Itamiya, Toshihiko Komai, Shinji Izuka, Kosuke Matsuki

“…Subsequently, we examined clinical and transcriptomic differences among these stratified clusters.Results Patients with IMDs were stratified into two clusters based on their immunophenotypes. …”
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Exploring individual differences in fear extinction in male and female mice: insights from HPA axis, microbiota, and transcriptomics by Marc Ten-Blanco, María Ponce-Renilla, Inmaculada Pereda-Pérez, Cristina Izquierdo-Luengo, Carlo Bressa, Olga Zafra, Rosa María Tolón, Fernando Berrendero

“…We also identified clear differences in the transcriptomic profile of the amygdala (31 differentially expressed genes) in male animals. …”
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Comparative transcriptome analysis of different tissues of Hylomecon japonica provides new insights into the biosynthesis pathway of triterpenoid saponins by Bing He, Teng Xu, Shaowei Xu, Huqiang Fang, Qingshan Yang, Qingshan Yang

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Transcriptomic and metabolomic insights into temperature-dependent changes in catechin and anthocyanin accumulation in tea plants with different leaf colors by Jingbo Yu, Qianying Wang, Wenli Wang, Ruihong Ma, Changqing Ding, Kang Wei, Liyuan Wang, Shibe Ge, Yuanzhi Shi, Xin Li

“…Temperatures influence leaf color and secondary metabolite accumulation in tea plants and thus it is worth investigating global metabolic and transcriptomic changes in different tea cultivars under different temperature regimes. …”
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Dietary protein requirement of Chinese hook snout carp (Opsariichthys bidens) and transcriptomic analysis of the liver in response to different protein diets by Yijiang Bei, Linqiang He, Jin Jing, Xiaoming Chen, Fan Yuan, Gaohua Yao, XueYan Ding, Lei Wang, Fan Zhou

“…The low protein diet inhibited hepatic protein and lipid metabolism, whereas high dietary protein inhibited nutrient digestion but promoted an immune response on the basis of transcriptomic analysis.…”
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Analysis of Transcriptional and Metabolic Differences in the Petal Color Change Response to High-Temperature Stress in Various Chrysanthemum Genotypes by Zhimei Li, Hougao Zhou, Yan Chen, Minyi Chen, Yutong Yao, Honghui Luo, Qing Wu, Fenglan Wang, Yiwei Zhou

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Hypothesis-generating analysis of the impact of non-damaging metabolic acidosis on the transcriptome of different cell types: Integrated stress response (ISR) modulation as general transcriptomic reaction to non-respiratory acidic stress? by Virginie Dubourg, Marie-Christin Schulz, Philipp Terpe, Stefanie Ruhs, Michael Kopf, Michael Gekle

“…Microenvironmental acidosis accompanies different pathological situations, including inflammation, hypoxia and ischemia. …”
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Effects of different shade treatments on the biosynthesis of main phytohormones in the leaves of tea plants by JIN Jing, LÜ Yiqing, HE Weizhong, SHU Zaifa, YE Jianhui, LIANG Yuerong

“…The present study used different shade treatments (black, red, blue, and yellow shade net treatments) to alter the light conditions (including light intensity and spectral composition) for the growth of tea plants, and investigated the effects of different shade treatments on the phytohormone levels and transcriptome profiles of the leaves of ‘Fuding white tea’ plants, with taking the tea plants grown under the natural light conditions as the control group (CK). …”
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Metabolite differences and molecular mechanism between dehiscent and indehiscent capsule of mature sesame by Yinping Zhang, Ruirui Chen, Yujun Liu, Shuwen Xu, Shuguang Gao, Haiyang Zhang, Hongmei Miao, Lingling Qin, Xiangyu Zhou, Kiran Thakur, Cheng Li, Juan Li, Pengcheng Wei, Zhao-Jun Wei

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InterTransViewer: a comparative description of differential gene expression profiles from different experiments by А. V. Tyapkin, V. V. Lavrekha, E. V. Ubogoeva, D. Yu. Oshchepkov, N. A. Omelyanchuk, E. V. Zemlyanskaya

“…Meta-analysis of transcriptomic data from different experiments has become increasingly prevalent due to a significantly increasing number of genome-wide experiments investigating gene expression changes under various conditions. …”
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Transcriptomic analysis of fiber strength in upland cotton chromosome introgression lines carrying different Gossypium barbadense chromosomal segments. by Lei Fang, Ruiping Tian, Jiedan Chen, Sen Wang, Xinghe Li, Peng Wang, Tianzhen Zhang

“…To understand the mechanism underlying fiber strength, we compared fiber transcriptomes from different G. barbadense chromosome introgression lines (CSILs) that had higher fiber strengths than their recipient, G. hirsutum acc. …”
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Transcriptomic changes behind Sparus aurata hepatic response to different aquaculture challenges: An RNA-seq study and multiomics integration. by Cláudia Raposo de Magalhães, Kenneth Sandoval, Ferenc Kagan, Grace McCormack, Denise Schrama, Raquel Carrilho, Ana Paula Farinha, Marco Cerqueira, Pedro M Rodrigues

“…Here, we characterized for the first time, using RNA-seq, the different hepatic transcriptome responses of gilthead seabream to common aquaculture challenges, namely overcrowding, net handling, and hypoxia, further integrating them with the liver proteome and metabolome responses. …”
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