A Preliminary Exploration of Transcriptome and Proteomic Changes During the Young and Harvest Periods in <i>Morchella sextelata</i> by Weilin Feng, Zier Guo, Qunli Jin, Fei Xu, Yingyue Shen, Tingting Song, Mei Wang, Jun Zhang, Lijun Fan, Xianbin Huang, Weiming Cai

“…Based on GO and KEGG analysis, significant differences in the transcriptomes and proteins in metabolic pathways are disclosed. …”
Get full text

Spatial transcriptomics combined with single-nucleus RNA sequencing reveals glial cell heterogeneity in the human spinal cord by Yali Chen, Yiyong Wei, Jin Liu, Tao Zhu, Cheng Zhou, Donghang Zhang

“…Additionally, we detected sex differences in gene expression in human spinal cord glial cells. …”
Get full text

Comparative transcriptome analysis reveals various host responses to sacbrood virus infection in Apis cerana and Apis mellifera by Zih-Ting Chang, Yu-Feng Huang, Tzu-Han Chen, Li-Hung Chen, Chung-Yu Ko, Yu-Shin Nai, Yue-Wen Chen

Get full text

Genetic and metabolic mechanisms underlying webbed feet pigmentation in geese: Insights from histological, transcriptomic, and metabolomic analyses by Yi Liu, Kaiqi Weng, Guangquan Li, Huiying Wang, Yu Tan, Daqian He

“…This study systematically investigated the genetic and metabolic mechanisms underlying pigmentation in goose webbed feet by integrating histological, transcriptomic, and metabolomic analyses. Histological examinations revealed significant differences in melanin deposition among webbed feet of varying colors. …”
Get full text

Transcriptomic and glucose metabolism of connectome dynamics variability in temporal lobe epilepsy revealed by simultaneous PET-fMRI by Jie Hu, Bixiao Cui, Zhenming Wang, Jingjuan Wang, Xiaoyin Xu, Jie Lu

“…These case-control differences were validated through split-half analyses and remained unaffected by medication or lateralization. …”
Get full text

Transcriptomic and biometric parameters analysis in rainbow trout (Oncorhynchus mykiss) challenged with viral hemorrhagic septicemia virus (VHSV) by Mohammad Ghaderzadeh, Ghodrat Rahimi-Mianji, Ardeshir Nejati-Javaremi, Nastaran Shahbazian

Get full text

Transcriptomic analysis reveals potential crosstalk genes and immune relationship between triple-negative breast cancer and depression by Zhili Zhuo, Wenping Lu, Ling Zhang, Dongni Zhang, Yongjia Cui, Xiaoqing Wu, Heting Mei, Lei Chang, Qingya Song

Get full text

Comparative transcriptomic analysis and identification of candidate genes related to Verticillium wilt resistance in Gossypium barbadense and Gossypium hirsutum by Jieyin Zhao, Xingui Hu, Yuxiang Wang, Jiaxin Lu, Wenju Gao, Xuening Su, Quanjia Chen, Yanying Qu

“…Here, we report a transcriptomic study for phenotypic evaluation of Verticillium wilt resistance in G. hirsutum (TM-1) and G. barbadense (Hai7124) and a comparison of the transcriptomes at 7 time points after Verticillium dahliae inoculation. …”
Get full text

Combining QTL mapping and transcriptomics to identify candidate genes for cold tolerance during the budding and seedling stages in rice by Chun Ae Kim, Wenqiang Chen, Shuangbing Zhu, Guogen Zhang, Congcong Shen, Kai Chen, Xiuqin Zhao, Tianqing Zheng, Wensheng Wang, Jianlong Xu

“…A comprehensive analysis integrating QTL and transcriptome data from both stages revealed distinct differences in CT mechanisms, highlighting stage-specific variations. …”
Get full text

Transcriptomic and histological characteristics of innate immune activation in brain parenchyma in a rat model of neonatal intraventricular hemorrhage by Miriam Zamorano, Sanjna Udtha, Aidan M. Collier, Erica Underwood, Razan El Sayed, Ankit Agarwal, Devin S. Hatchell, Chunfeng Tan, Paul J. Nietert, Scott D. Olson, Brandon A. Miller

Get full text

Verification of biological markers of subacute cutaneous lupus erythematosus via TMT labelling proteomics combined with transcriptome data by Yuan Tao, Guo Hua, Sun Min, Lu Xiao-hong, Jiang Jia-hui, Tang Biao, He Cai-feng, Zhang Cheng, Ci Chao, Wu Jian-ping

“…The differences in transcriptomic data from peripheral blood mononuclear cells (PBMCs) of patients with systemic lupus erythematosus (SLE) and normal controls were analysed (GSE81622 and GSE154851). …”
Get full text

Large-scale transcriptomic analyses of major depressive disorder reveal convergent dysregulation of synaptic pathways in excitatory neurons by Fernando S. Goes, Leonardo Collado-Torres, Peter P. Zandi, Louise Huuki-Myers, Ran Tao, Andrew E. Jaffe, Geo Pertea, Joo Heon Shin, Daniel R. Weinberger, Joel E. Kleinman, Thomas M. Hyde

Get full text

Potential shared mechanisms in atopic dermatitis and type 2 diabetes identified via transcriptomic and machine learning approaches by Yang Zhang, Qiangman Wei, Qianzhi Chen

“…Despite their apparent differences, the molecular mechanisms shared between AD and T2DM remain relatively unexplored. …”
Get full text

Microbial-transcriptome integrative analysis of heat stress effects on amino acid metabolism and lipid peroxidation in poultry jejunum by Young-Jun Seo, Chiwoong Lim, Byeonghwi Lim, Jun-Mo Kim

“…Heat stress engendered statistically significant difference in the abundance of 11 microorganisms, including Bacteroides and Peptostreptococcacea. …”
Get full text

Integrating transcriptome and metabolome analyses to characterize flower development in Salix variegata franch., a typical dioecious plant by Huan Zhang, Wenqiao Li, Xiao Zhang, Rui Pan, Mingwei Tang, Yang Peng, Yiyun Wang, Youwei Zuo, Zhe Zhang, Hongping Deng

“…As a result, 12,245 differentially expressed genes (DEGs) and 4,145 differently expressed metabolites (DEMs) were identified. …”
Get full text

Transcriptomic landscape around wound bed defines regenerative versus non-regenerative outcomes in mouse digit amputation. by Archana Prabahar, Connie S Chamberlain, Ray Vanderby, William L Murphy, William Dangelo, Kulkarni Mangesh, Bryan Brown, Barsanjit Mazumder, Stephen Badylak, Peng Jiang

“…Furthermore, early macrophage phenotypes differ distinctly between regenerative and non-regenerative outcomes. …”
Get full text

Transcriptomic Dysregulation in Animal Models of Attention‐Deficit Hyperactivity Disorder and Nicotine Dependence Suggests Shared Neural Mechanisms by Sarah Van Horn, Heather Driscoll, Donna J Toufexis

“…Methods The present analysis compared transcriptomic data from the brains of rodent models of ADHD and those of ND, with a focus on striatal gene expression. …”
Get full text

Hepatocyte reporter cells and integrated metabolomic and transcriptomic analyses reveal insights into hepatocyte changes in offspring of pregnancies with obesity by Svetlana Y. Kozlovich, Amy Y. Pan, Jennifer J. McIntosh, Anna Palatnik, Shuang Jia, Martin J. Hessner, T. Hang Nghiem-Rao

“…We integrated metabolomic analysis of umbilical cord plasma and transcriptomic analysis of cord plasma-exposed hepatocytes to examine differences in the intrauterine environment of pregnancies with and without maternal obesity. …”
Get full text

Identification of key LncRNAs and mRNAs in fat deposition of Saba pigs based on comparative analysis of transcriptomics by Xinxing Dong, Xinpeng Li, Xiaoyi Wang, Qiang Chen, Mingli Li, Dawei Yan, Guoxiang Lan, Shaoxing Lu

“…This study focused on profiling LncRNAs in back fat deposition in Saba and Yorkshire pigs, which exhibit significant differences in fat accumulation. Using transcriptome sequencing and bioinformatics, we identified 704 differentially expressed mRNAs and 50 LncRNAs. …”
Get full text

Spatial transcriptomic analysis of 4NQO-induced tongue cancer revealed cellular lineage diversity and evolutionary trajectory by Feng Liu, Feng Liu, Xiaojun Wu, Shaoqing Yu, Deqiang Cheng, Jun Pan, Xiaodong Wang, Guanzhen Yu, Guanzhen Yu, Chaofu Li

“…IntroductionSpatial transcriptomic analysis has proposed valuable insights into the behavior of tongue cancer. …”
Get full text