The Scarlet Alchemy of Survival: Integrated Transcriptomic and Metabolomic Analysis of Leaf Coloration in Endangered <i>Parrotia subaequalis</i> by Lifang Zhang, Aya Hafsi, Xianting Wang, Chenyun Zhang, Zedong Lang, Mingjian Yu, Yanming Fang

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Accumulation differences of high-value ingredients in different phenotype Lonicera macranthoides: insights from integrative metabolome and transcriptome analyses by Juan Zeng, Juan Zeng, Yu Qing Long, Yu Qing Long, Jia Yuan Zhu, Jia Yuan Zhu, Xue Sen Fu, Xue Sen Fu, Jing Yu Zhang, Jing Yu Zhang, Jia Wei He, Jia Wei He, Xiao Rong Liu, Xiao Rong Liu, Zhi Hui Wang, Zhi Hui Wang, Qiao Zhen Tong, Qiao Zhen Tong, Xiang Dan Liu, Xiang Dan Liu, Xiang Dan Liu, Ri Bao Zhou, Ri Bao Zhou, Ri Bao Zhou

“…MethodsThe present study intergrated a comparative analysis upon UPLC-MS/MS-based metabolomics and RNA-seq-based transcriptomics to revealed the differences in accumulation of flavonoids, phenolic acids, and terpenoids between the xianglei-type (corolla-closed) and wild-type (corolla-unfolded) of L. macranthoides flowers. …”
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Transcriptomic signatures of rare variant impacts across sex and the X chromosome by Rachel A. Ungar, Taibo Li, Nikolai G. Vetr, Nicole Ersaro, Alexis Battle, Stephen B. Montgomery

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Use of Transcriptomics to Identify Candidate Genes for Hematopoietic Differences Between Wujin and Duroc Pigs by Peng Ji, Ping Wang, Qihua Li, Lin Gao, Yan Xu, Hongbin Pan, Chunyong Zhang, Jintao Li, Jun Yao, Qingcong An

“…Six differentially expressed genes may be related to hematopoietic function. (3) By combining the differential genes screened through sequencing with Weighted Gene Co-expression Network Analysis results, 16 hematopoietic function differential genes were obtained, mainly focusing on immunity, inflammation, and induction of apoptosis functions. Differences were present in the immune and inflammatory responses between Wujin pigs and Duroc pigs, suggesting that differences in hematopoietic function between the two breeds were related to antioxidant capacity and disease resistance.…”
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Transcriptome analysis revealed the mechanism of skeletal muscle growth and development in different hybrid sheep by Mengyu Lou, Sihuan Zhang, Wangxin Yang, Shuang Li, Hongguo Cao, Zijun Zhang, Yinghui Ling

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Peripheral blood transcriptomic differences predict depression status in individuals undergoing bariatric surgery by Rebecca Milton, Anna P. McLaughlin, Nicole Mariani, Melisa Kose, Zuzanna Zajkowska, Giulia Lombardo, Naghmeh Nikkheslat, Esperanza Perucha, Valeria Mondelli

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Integrated metabolome and transcriptome analysis of maize roots response to different degrees of drought stress by Yifan Wang, Luoluo Tong, Huiling Liu, Binyan Li, Renhe Zhang

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Analysis of Lipid Metabolism and Transcriptome Differences Before and After Wax Loading in Wax Gourd by Jinqiang YAN, Zhenqiang CAO, Jiesheng HONG, Piaoyun SUN, Wenrui LIU, Dasen XIE, Biao JIANG

“…【Objective】To explore composition and regulatory mechanism of the wax powder on the fruit surface of wax gourd, lipid metabolism and transcriptome was performed to analyze lipid and gene expression differences before and after wax loading.…”
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An Integrated Profiling of Liver Metabolome and Transcriptome of Pigs Fed Diets with Different Starch Sources by Miao Yu, Zhenming Li, Yiyan Cui, Ting Rong, Zhimei Tian, Dun Deng, Zhichang Liu, Ruiyang Zhang, Xianyong Ma

“…On day 44 of the experiment, liver samples were collected for metabolome and transcriptome analysis. Metabolome data suggested that different starch sources affected (<i>p</i> < 0.05) the metabolic patterns of liver. …”
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Spatial transcriptomic differences in the breast muscle of grower broilers at 21 and 28 days of age by Janghan Choi, Jihwan Lee, Doyun Goo, Gippeum Han, Venkata Sesha Reddy Choppa, Seshidhar Reddy Gudidoddi, Majid Shakeri, Hong Zhuang, Brian Bowker, Woo Kyun Kim, Byungwhi Kong

“…This study investigated transcriptomic differences between the caudal and cranial areas in breast muscle in the grower phase of broiler chickens (D 21 and D 28). …”
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Seasonal transcriptome profile across three different tissues of the Andean Killifish Orestias ascotanensis by Rodrigo Maldonado-Agurto, Elvis Acevedo, Vinicius Maracaja-Coutinho, Martin Montecino

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Phenotypic differences and transcriptomic analysis of extreme plant heights in a hybrid population of Hedychium by Xuanguo LIANG, Fang WANG, Yunyi YU, Yanping FAN

“…The qRT-PCR results showed that the expression change trends of these 13 genes were highly consistent with the transcriptome data. ConclusionThe main influencing factor for the phenotypic variation of the extreme plant height in the Hedychium hybrid population is the internode cell length, and the growth differences in the C segment of the tall and dwarf plants are the most significant. …”
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Transcriptomic Analysis of the Hepatopancreas in the Sex-Related Size Differences of <i>Macrobrachium nipponense</i> by Yabing Wang, Guangde Qiao, Yanfeng Yue, Shiming Peng, Hongtuo Fu

“…Herein, transcriptomics was used to determine the hepatopancreas transcriptome differences between sex-related size differences in <i>M. nipponense</i>. …”
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Transcriptome and metabolome analysis of the responses of salt resistance of different Helianthus annuus germplasms to melatonin by Changyan Zhao, Changyan Zhao, Yantao Liu, Xiuping Jia, Shengli Liu, Peng Wang, Zhifeng Zhu, Sumei Wan, Wei Duan

“…However, the effect of melatonin on the salt stress resistance of H. annuus is still unclear.MethodsIn this study, four H. annuus germplasms with different salt resistance (YE988, S2102, Longkuiza 4, and 909S) were selected from a total of 164 germplasms from China, France, Chili, the Unit States, etc. …”
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Comparative transcriptomes and WGCNA reveal hub genes for spike germination in different quinoa lines by Liubin Huang, Lingyuan Zhang, Ping Zhang, Junna Liu, Li Li, Hanxue Li, Xuqin Wang, Yutao Bai, Guofei Jiang, Peng Qin

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Identification of Potential Key Genes for Stem Polysaccharide Synthesis Based on Transcriptome Analysis of Different Developmental Stages of <i>Dendrobium officinale</i> by Tianwei Yang, Shiyu Huang, Shanshan Tian, Manrong Gao, Xiangjun Zhang, Longfei He, Shangwen Zhang

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Comparison and Analysis of Resistance Differences in <i>Alternaria alternata</i> from Fungicides with Three Different Mechanisms by Qian Bai, Xinbo Ma, Mansoor Hayat, Yuxin Tang, Zhanbin Wang

“…<i>alternata</i>, the result showed that prochloraz (PCZ), mancozeb (MZ), and fludioxonil (FLU) have potent inhibitory effects against the pathogen through different mechanisms. To investigate how the pathogen responded to fungicide-induced stress, transcriptome and physiological investigations were carried out after treatments with three fungicides at their corresponding 50% effective concentration (EC₅₀) doses. …”
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Transcriptomic and lipidomic analysis of aging-associated inflammatory signature in mouse liver by Tomoaki Ishihara, Hiroshi Tsugawa, Seigo Iwanami, Jen-Chien Chang, Aki Minoda, Makoto Arita

“…The objective of this study was to examine the impact of the gut microbiota on the transcriptome and lipidome associated with aging in mouse liver. …”
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Transcriptome analysis reveals the common and specific pathways of citric acid accumulation in different citrus species by Jiaxian He, Juan Sun, Yue Huang, Lun Wang, Shengjun Liu, Zhenghua Jiang, Xia Wang, Qiang Xu

“…The extremely significant differences in citric acid levels are observed among citrus species and varieties. …”
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Comparative Transcriptome Analysis of Eggplant (<i>Solanum melongena</i> L.) Peels with Different Glossiness by Hong Wang, Zhixing Nie, Tonglin Wang, Shuhuan Yang, Jirong Zheng

“…Differential gene expression related to eggplant peel glossiness was analyzed by comparing the transcriptomes of eggplant peels with different gloss levels and at different developmental stages. …”
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