Longitudinal transcriptomic analysis of the hyperoxia-exposed preterm rabbit as a model of BPD by Carlotta Boggi, Nicola Casiraghi, Xabier Murgia, Silvia Parolo, Enrica Scalera, Giorgio Aquila, Chiara Catozzi, Fabrizio Salomone, Francesca Stretti, Ilaria Minato, Francesca Ravanetti, Luisa Ragionieri, Roberta Ciccimarra, Matteo Zoboli, Gino Villetti, Barbara Montanini, Barbara Montanini, Francesca Ricci, Matteo Storti

“…Histological analyses confirmed extensive lung injury and reduced lung development after 7 days of hyperoxia. Longitudinal transcriptomic analysis revealed different expression patterns for several genes and pathways. …”
Get full text

Biological properties of Vibrio parahaemolyticus lytic phages and transcriptome analysis of their interactions with the host by Duanduan Chen, Zhiwei Wang, Xiangkai Li, Hongchi Du, Kaisheng Zhang, Shengliang Cao, Jianbiao Lu, Shuang Zhao, Hui Wang, Yubao Li

Get full text

Comparative Analysis of Ratoon-Competent and Ratoon-Deficient Sugarcane by Hormonal and Transcriptome Profiling by Liping Zhao, Maoyong Ran, Jing Zhang, Peifang Zhao, Fenggang Zan, Jun Zhao, Wei Qin, Qibin Wu, Jiayong Liu, Xinlong Liu

“…Through integrated hormonal profiling and transcriptome analysis, we identified significant differences in hormone levels and gene expression patterns. …”
Get full text

Integrative Analysis of Plasma Proteomics and Transcriptomics Reveals Potential Therapeutic Targets for Psoriasis by Hesong Wang, Chenguang Wang, Ruihao Qin, Jia He, Xuan Zhang, Chenjing Ma, Shi Li, Lijun Fan, Liuying Wang, Lei Cao

Get full text

Combining transcriptomic and metabolomic insights into carbohydrate utilization by Ruminiclostridium papyrosolvens DSM2782 by Mengcheng You, Zhenxing Ren, Letian Ye, Qiuyun Zhao, Ziyi Liu, Houhui Song, Chenggang Xu

Get full text

Study of head and neck squamous cell carcinoma transcriptome after proton therapy by E. D. Jumaniyazova, P. A. Vishnyakova, M. V. Chirkova, E. A. Karpulevich, I. Z. Eremina, K. B. Gordon, A. D. Kaprin, T. H. Fatkhudinov

“…To evaluate changes in the transcriptome of head and neck squamous cell carcinoma (HNSCC) tissue cells in patients after proton therapy.Materials and methods. …”
Get full text

Investigating the Effect of Microcystins on the Transcriptomics of Hepatopancreas in Penaeus vannamei Using Reverse-Gavage by Haiqing YUAN, Rongsheng JIN, Baoran WANG, Daiqiang CHEN, Shuangyong ZHANG, Zhiqiang CHANG

“…The results of the transcriptome sequencing were validated using quantitative real-time PCR.MC-LR induced significant differential expression of 1 994 genes compared to the control group. …”
Get full text

Integrated transcriptomic and metabolomic analyses reveal heterosis for meat quality of Neijiang pigs by Haifeng Dan, Haifeng Dan, Haifeng Dan, Chengming Liu, Chengming Liu, Chengming Liu, Huiling Zhang, Huiling Zhang, Huiling Zhang, Mailin Gan, Mailin Gan, Mailin Gan, Yan Wang, Yan Wang, Yan Wang, Lei Chen, Lei Chen, Lei Chen, Ye Zhao, Ye Zhao, Ye Zhao, Bin Liu, Kangping Zhu, Lili Niu, Lili Niu, Lili Niu, Li Zhu, Li Zhu, Li Zhu, Linyuan Shen, Linyuan Shen, Linyuan Shen

“…This study compared the differences in carcass and meat quality traits between NJ pigs and NL pigs, and for the first time comprehensively analyzed the longissimus dorsi muscle of NJ pigs and NL pigs using transcriptomics and metabolomics. …”
Get full text

A Transcriptomic Dataset of Embryonic Murine Telencephalon of Fmr1-Deficient Mice by Sara Ebrahimiazar, Takako Kikkawa, Yohei Minakuchi, Satoshi Miyashita, Shyu Manabe, Mikio Hoshino, Atsushi Toyoda, Noriko Osumi

Get full text

Neuromorphic deviations associated with transcriptomic expression and specific cell type in Alzheimer’s disease by Jinzhong Peng, Qin Tang, Yilu Li, Lin Liu, Bharat Bhusan Biswal, Pan Wang

“…Analysis of gene expression shows the spatial correlations between AD-related genes and MSN differences. Examination of cell type-specific signature genes indicates that changes in microglia and neuronal transcriptional profiles largely contribute to AD-specific MSN differences. …”
Get full text

Transcriptomics-based characterization of the immuno-stromal microenvironment in pediatric low-grade glioma by Meik Körner, Michael Spohn, Ulrich Schüller, Michael Bockmayr

Get full text

Unraveling developmental gene regulation in holometabolous insects through comparative transcriptomics and proteomics by Maya Wilkens, Susanne Zimbelmann, Franziska Roth, Jasmin Cartano, Sergi Sayols, Mario Dejung, Michal Levin, Falk Butter

“…Such changes are typically driven by strong transcriptome and proteome dynamics, making this process an excellent system for comparing these two levels of regulation. …”
Get full text

Meta-transcriptomics Reveals Dysbiosis of the Respiratory Microbiome in Older Adults with Long COVID by Meng’en Liao, Jianpeng Cai, Feng Zhu, Yuanbo Lan, Tianqi Xu, Jingxin Guo, Quanlin Xue, Yilong Wen, Fan Zou, Yu Zhang, Shiliang Zhang, Yan Yan, Jingwen Ai, Jie Cui, Wenhong Zhang

“…This study aimed to characterize the respiratory microbiome of older LC patients (with an average age of 65 years old), through meta-transcriptomic sequencing of 201 individual samples. Marked differences in microbial diversity were observed between LC and non-LC patients, including disruptions in both pathogenic bacteria and fungi. …”
Get full text

Comparative analysis of translatomics and transcriptomics in the longissimus dorsi muscle of Luchuan and Duroc pigs. by Songtao Su, Hailong Hu, Kang Liu, Siqi Liu, Zupeng Luo, Jingsu Yu, Tianyu Jiang, Xiangling Li, Chang Sun, Lin Yu, Yuehui Liang, Lei Zhou

Get full text

Microalgae Pediastrum boryanum enhances growth and modulates physiology and transcriptome in Nile tilapia by Raghad E. Soliman, Ahmed Ateya, Mohamed Abou-El-Atta, Wasseem Emam, Mohamed M. Abdel-Rahim, Ashraf I. G. Elhetawy, Ahmed E. Elshafey, Radi A. Mohamed

“…Abstract The study aimed to explore the impact of dietary Pediastrum boryanum (PB) on growth performance, immune-physiological and transcriptome responses of Nile tilapia (Oreochromis niloticus). …”
Get full text

Transcriptomic analysis of neural stem and progenitor cells in comparison with glioblastoma stem cells by V. E. Shevchenko, N. E.  Arnotskaya, T.  I. Kushnir, A. S. Bryukhovetskiy

“…To conduct a comparative transcriptomic analysis of CD133+-NSPCs and CD133+-GSCs to study the molecular genetic differences between the phenotypes of these cells and identify potential targets for therapeutic effects on GSCs.Materials and methods. …”
Get full text

Impact of perinatal factors on T cells and transcriptomic changes in preterm infant brain injury by Xiaoli Zhang, Yu Yang, Yiran Xu, Liuji Chen, Ming Niu, Jinjin Zhu, Shan Zhang, Yanan Wu, Bingbing Li, Lingling Zhang, Juan Song, Falin Xu, Dan Bi, Xin Zhao, Changlian Zhu, Xiaoyang Wang

“…In the third cohort, transcriptome sequencing identified differentially expressed genes and pathways in infants with brain injury, highlighting immune-related changes. …”
Get full text

Comparative transcriptomics of atrazine-tolerant and sensitive alfalfa varieties under atrazine stress by Yingao Li, Chunyang Dong, Zeshan Zulfiqar, Haojie Wang, Jiading Lu, Xiaoxia Zhang, Jun Li, Yinghua Shi, Chengzhang Wang, Xiaoyan Zhu, Hao Sun

“…However, atrazine, a widely used herbicide, negatively impacts the growth and yield of alfalfa due to its residual presence in the environment. Transcriptomic analysis was performed to investigate the differences in tolerance and uncover the potential molecular regulatory mechanisms between the tolerant variety JN5010 and the sensitive variety WL363 when subjected to atrazine stress, using RNA-seq on pooled samples. …”
Get full text

Comparative transcriptomic and proteomic analyses of hypoxia response in wild and cultivated tomato roots by Zhihan Zhang, Yabing Hou, Hao Yin, Song Lu, Daliang Liu, Lin Cheng, Houlin Yu, Tao Li, Yiyong Zhao

“…Heatmap clustering and functional enrichment analysis revealed significant differences in transcriptional regulation between T178 and FZZ under hypoxia. …”
Get full text

Single-cell and spatial transcriptomic insights into glioma cellular heterogeneity and metabolic adaptations by Yixin Fu, Yong Yi, Yongxiang Shao, Jingcheng Jiang, Qingshan Deng

“…Diverse cellular subpopulations, including malignant proliferative cells, stem-like cells, mesenchymal-like cells, and immune-related cells, contribute to tumor progression, treatment resistance, and microenvironmental interactions. Spatial transcriptomics has further revealed distinct spatial distributions of these subpopulations, highlighting differences in metabolic activities between the tumor core and periphery. …”
Get full text