Development of EST-SSR markers based on transcriptome for genetic analysis in Radix Ardisia by Deqiang Ren, Wenwen Wu, Qinqin Wen, Yujiao Li

“…The statistical analysis showed that six types of SSR nucleotides could be detected, but the number and frequency of EST-SSR in different primitive types were significantly different. …”
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Negative effect of seasonal heat stress on testis morphology and transcriptomes in Angora rabbit by Haisheng Ding, Yuanlang Wang, Huiling Zhao, Jinzi Wang, Dongwei Huang

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Transcriptomic, histological and biochemical analyses of Macrobrachium nipponense response to acute heat stress by Xiao Wu, Yaoran Fan, Jianbin Feng, Keyi Ma, Jiale Li

“…And histological, biochemical and transcriptomic analyses were carried out on the gills and hepatopancreas under different temperatures. …”
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Transcriptomic profiling of watermelon (Citrullus lanatus) provides insights into male flowers development by Ying-chun ZHU, Gao-peng YUAN, Sheng-feng JIA, Guo-lin AN, Wei-hua LI, De-xi SUN, Jun-pu LIU

“…Watermelon fruit quality, fertility, and seed-setting rate are closely related to male flower development. In this study, the different developmental stages of flower buds of the watermelon cultivar ‘Xinteda Zhengkang 9’ were distinguished by cytological observation, and transcriptome sequencing analysis was performed subsequently. …”
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Metabolome and Transcriptome Analyses Revealing the Molecular Mechanisms of Precarious Fertility in Quinoa Cultivars by Chao Song, Qingyun Huang, Chunsong Lin, Huihua Li, Ziyang Li, Yiding Xu, Fei Chen, Xueqin Zhang, Zhiqiang Wu, Suxia Xu

“…Phytohormone profiling yielded 60 metabolites and revealed the clear separation between different ecotypes at different developmental stages according to principal component analysis (PCA). …”
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Deciphering Transcriptomic and Metabolomic Wood Responses to Grapevine Trunk Disease-Associated Fungi by Ana Romeo-Oliván, Justine Chervin, Coralie Breton, Virginie Puech-Pagès, Sylvie Fournier, Guillaume Marti, Olivier Rodrigues, Jean Daydé, Bernard Dumas, Alban Jacques

“…Transcriptomic analysis revealed different gene expression reprogramming in the trunk in response to each fungus. …”
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Comparative Transcriptome Analysis of Two Types of Rye Under Low-Temperature Stress by Haonan Li, Jiahuan Zhao, Weiyong Zhang, Ting He, Dexu Meng, Yue Lu, Shuge Zhou, Xiaoping Wang, Haibin Zhao

“…By studying the differential responses of different rye varieties to low-temperature stress at the transcriptome level, we aim to identify key genes and regulatory mechanisms related to cold tolerance. …”
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Transcriptomic insights into the synergistic effects of darkness and mechanical stimulation on peanut pod development by Lu Huang, Muhammad J. Umer, Hao Liu, Haifen Li, Runfeng Wang, Qianxia Yu, Shaoxiong Li, Rajeev K. Varshney, Manish K. Pandey, Yanbin Hong, Qing Lu, Xiaoping Chen

“…Results In this study, we investigated the impacts of dark and mechanical stimulation on peanut pod development via transcriptome. A total of 55,087 genes, along with a series of DEGs and pathways, were identified among different treatment groups (CK, TB, TML, and TMB) that play crucial roles and offer a novel perspective on the role of photosynthesis during peanut pod development. …”
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Transcriptomes That Confer to Plant Defense against Powdery Mildew Disease in Lagerstroemia indica by Xinwang Wang, Weibing Shi, Timothy Rinehart

“…Transcriptome analysis was conducted in two popular Lagerstroemia cultivars: “Natchez” (NAT), a white flower and powdery mildew resistant interspecific hybrid and “Carolina Beauty” (CAB), a red flower and powdery mildew susceptible L. indica cultivar. …”
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Insights into the transcriptomic heterogeneity of brain endothelial cells in normal aging and Alzheimer’s disease by Qian Yue, Shang Li, Chon Lok Lei, Huaibin Wan, Zaijun Zhang, Maggie Pui Man Hoi

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SpaMask: Dual masking graph autoencoder with contrastive learning for spatial transcriptomics. by Wenwen Min, Donghai Fang, Jinyu Chen, Shihua Zhang

“…Recent advancements in spatial resolved transcriptomics (SRT) have enabled the analysis of gene expression while preserving the spatial context within tissues. …”
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Integrative analysis of 115 transcriptomic studies decodes the molecular landscape of neurodevelopmental disorders by Jarno Koetsier, Lars M. T. Eijssen, Leon J. Schurgers, Leopold M. G. Curfs, Chris P. Reutelingsperger, Nasim Bahram Sangani

“…In addition to revealing an aberrant expression profile of imprinted genes, our analysis identified transcriptomic changes in inflammatory, translational, mitochondrial, and synaptic processes across the different NDDs. …”
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Insights into the molecular mechanisms of browning tolerance in luffa: a transcriptome and metabolome analysis by Shan Wu, Miao Sun, Huashan Lian

“…In the flavonoid metabolic pathway, 57 key structural genes, such as PAL, C3H, and 4CL, were identified. These genes showed different expression patterns between the two luffa varieties. …”
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Transcriptome analysis unveils survival strategies of Streptococcus parauberis against fish serum. by Yoonhang Lee, Nameun Kim, HyeongJin Roh, Ahran Kim, Hyun-Ja Han, Miyoung Cho, Do-Hyung Kim

“…Although S. parauberis SPOF3K proliferated in both culture conditions, the transcriptomic patterns of the two groups were very different. …”
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Universal receptive system as a novel regulator of transcriptomic activity of Staphylococcus aureus by George Tetz, Kristina Kardava, Maria Vecherkovskaya, Alireza Khodadadi-Jamayran, Aristotelis Tsirigos, Victor Tetz

“…After destruction of the DNA-based-, RNA-, or combined DNA- and RNA-based TezRs of S. aureus, 103, 150, and 93 genes were significantly differently expressed, respectively. The analysis revealed differential clustering of gene expression following the loss of different TezRs, highlighting individual cellular responses following the loss of DNA- and RNA-based TezRs. …”
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Transcriptome analysis of muscles reveals the effect of low temperature on the growth of Procambarus clarkii by Xiajun Chen, Long Huang, Jing Chen, Benli Wu, Cangcang Wu, Yaoping Mei, Jixiang He

“…Transcriptome sequencing analysis was performed on the muscles of crayfish, and a total of 14,012 genes were obtained. …”
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Transcriptomic and Lipidomic Characteristics of Subcutaneous Fat Deposition in Small-Sized Meat Ducks by Hao Zheng, Cui Wang, Ao Zhou, Xing Chen

“…<b>Method:</b> In the present study, to elucidate the metabolic mechanisms of lipid deposition, we comprehensively analyzed the transcriptomics and lipidomics of subcutaneous fat in Wuqin10 meat ducks with different subcutaneous thicknesses with six replicates. …”
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Decoding hippocampal subfield and glial responses in ischemia using single-cell transcriptomics by Donghee Kwak, Ji Hyun Park, Yun Hak Kim, Hong Il Yoo

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Transcriptomic and metabolomic study of the biosynthetic pathways of bioactive components in Amomum tsaoko fruits by Dengli Luo, Yingmin Zhang, Ling Jin, Xien Wu, Congwei Yang, Ticao Zhang, Guodong Li

“…This study employed transcriptome sequencing and metabolomic analysis of A. tsaoko at five different developmental stages (May fruit – September fruit) to assess the accumulation patterns of terpenoid and curcuminoid compounds and to explore the key genes and transcription factors (TFs) involved in their synthesis pathways. …”
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STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes by Ran Wang, Yan Qian, Xiaojing Guo, Fangda Song, Zhiqiang Xiong, Shirong Cai, Xiuwu Bian, Man Hon Wong, Qin Cao, Lixin Cheng, Gang Lu, Kwong Sak Leung

“…Abstract Here we present STModule, a Bayesian method developed to identify tissue modules from spatially resolved transcriptomics that reveal spatial components and essential characteristics of tissues. …”
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