Unveiling regulatory variants in the blood transcriptome and their association with immunity traits in pigs by Teodor Jové-Juncà, Daniel Crespo-Piazuelo, Daniel Crespo-Piazuelo, Carles Hernández-Banqué, Olga González-Rodríguez, Lingzhao Fang, Raquel Quintanilla, Maria Ballester

“…Moreover, 430,694 variants were found to be associated with the expression of 10 or more different genes and were annotated as transcriptional hotspots. …”
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Woodsmoke and diesel exhaust: Distinct transcriptomic profiles in the human airway epithelium by Ryan D. Huff, Christopher F. Rider, Theodora Lo, Kristen I. Hardy, Nataly El-Bittar, Min Hyung Ryu, Chris Carlsten, Emilia L. Lim

“…We demonstrate that two major air pollution sources modulate different genes and pathways in HBECs, with minimal overlap. …”
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Identification of transition factors in myotube formation from proteome and transcriptome analyses by Qi ZHENG, Rong-cui HU, Cui-yun ZHU, Jing JING, Meng-yu LOU, Si-huan ZHANG, Shuang LI, Hong-guo CAO, Xiao-rong ZHANG, Ying-hui LING

“…In this study, we characterized changes in the proteomic and transcriptomic expression profiles of SSCs, myoblasts (differentiation for 2 d) and myotubes (differentiation for 10 d). …”
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Comparative Transcriptome Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Barley by Juan Zhu, Haoxin Yin, Cong Cao, Chengqun Sun, Mengna Zhang, Yi Hong, Yuhang Zhang, Chao Lv, Baojian Guo, Feifei Wang, Rugen Xu

“…The qPCR results were consistent with the transcriptome data, suggesting the reliability of the transcriptome sequencing. …”
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Unique lymphocyte transcriptomic profiles in septic patients with chronic critical illness by Evan L. Barrios, Leandro Balzano-Nogueira, Valerie E. Polcz, Christine Rodhouse, Jack R. Leary, Dijoia B. Darden, Jaimar C. Rincon, Marvin L. Dirain, Ricardo Ungaro, Dina C. Nacionales, Shawn D. Larson, Ashish Sharma, Gilburt Upchurch, Shannon M. Wallet, Todd M. Brusko, Todd M. Brusko, Tyler J. Loftus, Alicia M. Mohr, Robert Maile, Rhonda Bacher, Rhonda Bacher, Guoshuai Cai, Michael P. Kladde, Clayton E. Mathews, Lyle L. Moldawer, Maigan A. Brusko, Maigan A. Brusko, Philip A. Efron

“…IFN-γ production at the acute phase (day 4 ± 1) was significantly reduced in subjects later classified as CCI.DiscussionSepsis patients exhibit unique T-, B-, and NK-cell transcriptional patterns that are both time- and clinical trajectory-dependent. These transcriptomic and pathway differences in sepsis patients that develop CCI are associated with exhaustion in CD8+ TEM cells and NK cells. …”
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Infections of <i>Aedes</i> Mosquito Cells by <i>Wolbachia</i> Strains <i>w</i>Au and <i>w</i>Melpop Modulate Host Cellular Transcriptomes Differently and Suppress Dengue Viral Replication by Amber R. Mickelson, Julia Felton, Olivia Cheschi, Emily Spacone, Kaitlyn Connors, Jacob Thornsberry, Tadahisa Teramoto

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Transcriptome analysis of Ipomoea cairica algicidal mechanism against Phaeocystis globosa by Dayong Liang, Huanxin Li, Yuxuan Pan, Zihan Liu, Hua Xiang

“…Transcriptomic data also showed significant differences in differentially expressed genes (DEGs) at 24 and 48 h. …”
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Transcriptomic and metabolomic insights into flavor variations in wild and cultivated Agaricus bisporus by Zhi-Xin Cai, Zhi-Heng Zeng, Wen-Zhi Chen, Zhong-Jie Guo, Yuan-Ping Lu, Jian-Hua Liao, Hui Zeng, Mei-Yuan Chen

“…Results showed that although total protein and amino acid contents exhibited no significant differences, transcriptomic analysis identified significant upregulation of AGABI2DRAFT_188981 and AGABI2DRAFT_191000 (genes associated with high-affinity methionine permease MUP1) in cultivated strains, suggesting their indirect regulation of flavor formation via methionine metabolism. …”
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Transcriptomic characterization of human pancreatic CD206- and CD206 + macrophages by Alexander Jonsson, Olle Korsgren, Anders Hedin

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Charting the spatial transcriptome of the human cerebral cortex at single-cell resolution by Songren Wei, Meng Luo, Pingping Wang, Rui Chen, Xiyun Jin, Chang Xu, Chenyang Li, Xiaoyu Lin, Zhaochun Xu, Hongxin Liu, Rui Cheng, Wenyi Yang, Yideng Cai, Guangfu Xue, Peng Huang, Zhigang Liu, Haoxiu Sun, Jiangping Xu, Qinghua Jiang

“…The atlas, integrated with functional networks, highlights correlations between neural cell types and cortical functions, uncovering cell-cell interactions and ligand-receptor patterns with regional differences in neuron-glia communication. It also deciphers transcriptomic differences and cellular composition in layer 4 and the stable subplate (layer 6b) across regions. …”
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Comprehensive analysis of transcriptome and microbiome in colorectal cancer with synchronous polyp patients by Yubin Wang, Yongfeng Liu, Xiaoqiang Liu, Pengwei Xu, Mingjie Luo, Anle Huang, Zhijun Su

“…Transcriptome sequencing of tumor tissues, normal mucosa, and colorectal polyps from same 10 CRC patients was performed to identify differentially expressed genes (DEGs). …”
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Deciphering transcriptomic signatures in schizophrenia, bipolar disorder, and major depressive disorder by Priyanka, Rajesh Kumar, Vinod Kumar, Ashwani Kumar, Sandeep Singh Rana

“…Schizophrenia (SCZ), Bipolar Disorder (BD), and Major Depressive Disorder (MDD) are severe psychiatric conditions that share overlapping clinical symptoms, yet they differ in their underlying molecular mechanisms. Despite extensive research, the biological foundations of these disorders remain incompletely understood. …”
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Toll-Like Receptor Transcriptome in the HPV-Positive Cervical Cancer Microenvironment by Correne A. DeCarlo, Bruce Rosa, Robert Jackson, Sarah Niccoli, Nicholas G. Escott, Ingeborg Zehbe

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Transcriptomic Profiling in Low-Risk Thyroid Cancer Induced by Microwave Ablation by Huarong Li, Lei Liang, Jianming Li

“…This study aims to explore the transcriptomic profiling of the immune response in PBMCs induced by microwave ablation (MWA) in low-risk thyroid cancer. …”
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Genomic characterization, transcriptome analysis, and pathogenicity of the Nipah virus (Indian isolate) by Sreelekshmy Mohandas, Anita Shete, Prasad Sarkale, Abhinendra Kumar, Chandrasekhar Mote, Pragya Yadav

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Comparative transcriptomic and phenotypic analysis of monoclonal and polyclonal Populus deltoides genotypes by Macy Gosselaar, Macy Gosselaar, Mark A. Arick, Chuan-Yu Hsu, Heidi Renninger, Courtney M. Siegert, Waqar Shafqat, Daniel G. Peterson, Austin Himes

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Single cell transcriptomics in blood of patients with chronic obstructive pulmonary disease by Yeonjeong Heo, Jeeyoung Kim, Seok-Ho Hong, Woo Jin Kim

“…Conclusions Using scRNA-seq, we found differences in cell type distribution, especially in monocyte/ macrophages. …”
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Genomic and Transcriptomic Profiling of Amino Acid Compositions in Common Carp Fillets by Yingjie Chen, Kaikuo Wang, Qi Wang, Yiming Cao, Ran Zhao, Yan Zhang, Jiongtang Li

“…These findings revealed the major-effect processes and regulatory mechanisms modulating the differences in fillet AA contents. The genomic selection programs will guide the future selection of common carp with high AA contents.…”
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Influence of Pregnancy on Whole-Transcriptome Sequencing in the Mammary Gland of Kazakh Mares by Zhenyu Zhang, Zhixin Lu, Xinkui Yao, Linling Li, Jun Meng, Jianwen Wang, Yaqi Zeng, Wanlu Ren

“…This study compared genomic differences in mammary gland tissue of pregnant and non-pregnant Kazakh mares and identified candidate genes that are closely related to lactation regulation. …”
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Transcriptome analysis of aerotolerant and aerosensitive Campylobacter jejuni strains in aerobic conditions by Elise Delaporte, Anand B. Karki, Anand B. Karki, Mohamed K. Fakhr

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