Combining transcriptomics and metabolomics to analyse the mechanism of allelopathy in Cyclachaena xanthiifolia by Zelin Yang, Xiaoling Han, Zhixiang Xing, Fumeng He, Tianshuai Qi, Xue Wang, Rao Fu, Chong Du, Xu Feng, Yingnan Wang, Qiang Yuan, Fenglan Li, Wei Lan, Yongqing Xu

“…In this study, we used metabolomic and transcriptomic analyses to evaluate the differences in allelopathy and related physiological and biochemical indices among different extract fractions of C.xanthiifolia, and to investigate how the allelopathy of C.xanthiifolia inhibits seed germination and seedling growth by altering metabolic pathways. …”
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Single-nucleus transcriptomic profiling of the diaphragm during mechanical ventilation by Lei Li, Feng Jiang, Wenyan Hao, Yu Wang, Yaqian Li, Dong Zhang

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MVA-based SARS-CoV-2 vaccine candidates encoding different spike protein conformations induce distinct early transcriptional responses which may impact subsequent adaptive immunity by Ilka Grewe, Ilka Grewe, Ilka Grewe, Ilka Grewe, Monika Friedrich, Monika Friedrich, Monika Friedrich, Marie-Louise Dieck, Marie-Louise Dieck, Marie-Louise Dieck, Michael Spohn, Michael Spohn, Michael Spohn, My Linh Ly, My Linh Ly, My Linh Ly, Verena Krähling, Verena Krähling, Leonie Mayer, Leonie Mayer, Leonie Mayer, Sibylle C. Mellinghoff, Sibylle C. Mellinghoff, Sibylle C. Mellinghoff, Monika Rottstegge, Monika Rottstegge, Monika Rottstegge, Rebekka Kraemer, Asisa Volz, Asisa Volz, Stephan Becker, Stephan Becker, Anahita Fathi, Anahita Fathi, Anahita Fathi, Anahita Fathi, Christine Dahlke, Christine Dahlke, Christine Dahlke, Leonie M. Weskamm, Leonie M. Weskamm, Leonie M. Weskamm, Marylyn M. Addo, Marylyn M. Addo, Marylyn M. Addo

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Single-cell transcriptome reveals potential mechanisms for gout in children by Shengyou Yu, Ren Qi, Liang Xiao, YiHui Huang, Li Yu

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Developmental transcriptomic patterns can be altered by transgenic overexpression of Uty by Kylie D. Rock, Lillian M. Folts, Hannah C. Zierden, Ruth Marx-Rattner, Nicolae Adrian Leu, Bridget M. Nugent, Tracy L. Bale

“…Abstract The genetic material encoded on X and Y chromosomes provides the foundation by which biological sex differences are established. Epigenetic regulators expressed on these sex chromosomes, including Kdm6a (Utx), Kdm5c, and Ddx3x have far-reaching impacts on transcriptional control of phenotypic sex differences. …”
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Evaluation of the authenticity of Citri Grandis Exocarpium based on metabolomics and transcriptomics by Haiting Huang, Yu Liu, Jianmu Su, Xiangxiu Liang, Hong Wu, Mei Bai

“…CGE is a traditional medicinal herb from Guangdong Province (China) that primarily contains active substances, such as flavonoids, with expectorant, antitussive, and anti-inflammatory properties. However, the differences in quality and the mechanisms underlying these differences between the two plant sources specified in the Chinese Pharmacopoeia have not been fully elucidated. …”
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Transcriptomics and proteomics reveal associations between myometrium and intrauterine adhesions by Xiaotong Xu, Kaixuan Guo, Peng Zhao, Xuemei Zhang, Pan Zhao, Xianghang Sun, Mingle Zhang, Yanpeng Tian, Li Fen, Jiahua Zheng, Xianghua Huang

“…Additionally, some genes or proteins that participate in activating the complement-coagulation cascade system and extracellular matrix (ECM) degradation also significantly differed (p < 0.05). Conclusions Transcriptomic and proteomic data revealed a correlation between endometrial injury and the myometrium. …”
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Furanocoumarins in two European species of Heracleum: transcriptomic and metabolomic study by Victoria Yu. Shtratnikova, Viktor P. Bogdanov, Mikhail I. Schelkunov, Anna V. Klepikova, Mariya A. Kulbachnaya, Ekaterina N. Obukhova, Elena V. Ptitsyna, Margarita A. Ezhova, Aleksey A. Penin, Maria D. Logacheva

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Analysis of the Thinopyrum elongatum Transcriptome under Water Deficit Stress by Yongjun Shu, Jun Zhang, You Ao, Lili Song, Changhong Guo

“…The transcriptome of Thinopyrum elongatum under water deficit stress was analyzed using RNA-Seq technology. …”
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Hormonal and Transcriptomic Insights into Inflorescence Stalk Elongation in Oil Palm by Peng Shi, Yin Min Htwe, Dapeng Zhang, Zhiying Li, Qun Yu, Xiangman He, Jing Yang, Yong Wang

“…This study aimed to investigate the differences in stalk lengths between male and female inflorescences in Tenera oil palm and to elucidate the underlying hormonal and transcriptomic mechanisms. …”
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The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis. by Bart A Pannebakker, Urmi Trivedi, Mark L Blaxter, Rebekah Watt, David M Shuker

“…Recently, interest has begun to focus on the transcriptome as a route for identifying genes and gene pathways associated with behaviour. …”
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Meta-Transcriptomic Response to Copper Corrosion in Drinking Water Biofilms by Jingrang Lu, Ian Struewing, Nicholas J. Ashbolt

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Transcriptomic and untargeted metabolomic studies on the anticoccidial activity of eugenol in broilers by Tiantian Geng, Hongjun Yang, Jing Liu, Junlong Zhao, Yanqin Zhou

“…Eugenol demonstrated a lower oocyst output compared to eucalyptus oil, leading us to focus on the mechanism of eugenol's anticoccidial activity using transcriptomic and untargeted metabolomic analyses. Transcriptomic analysis of cecal tissue revealed 749 upregulated and 1057 downregulated differentially expressed genes (DEGs). …”
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Unveiling Wolbachia transcriptomic signature in the arboviral vector Aedes aegypti by Sebastián Mejías, Sebastián Mejías, Natalia E. Jiménez, Natalia E. Jiménez, Natalia E. Jiménez, Carlos Conca, Carlos Conca, J. Cristian Salgado, J. Cristian Salgado, Ziomara P. Gerdtzen, Ziomara P. Gerdtzen, Ziomara P. Gerdtzen, Ziomara P. Gerdtzen

“…Enhancing and preserving the efficacy of this method will depend on a solid mechanistic knowledge of the A. aegypti-Wolbachia symbiosis. By identifying differences between Wolbachia-infected and uninfected A. aegypti, previous transcriptomic studies proposed a wide range of symbiotic interactions, but a systematic identification of consistent effects across datasets is still missing.MethodsTo identify A. aegypti genes and functions consistently affected by Wolbachia, we performed differential expression and functional enrichment analysis on published transcriptomic datasets, followed by a meta-analysis of the obtained p-values using the maxP method. …”
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Transcriptional Dynamics Underlying Somatic Embryogenesis in <i>Coffea canephora</i> by Marcos-David Couoh-Cauich, Hugo A. Méndez-Hernández, Rosa M. Galaz-Ávalos, Ana Odetth Quintana-Escobar, Enrique Ibarra-Laclette, Víctor M. Loyola-Vargas

“…The detailed analysis of the primary transcriptional responses that occur during the SE of <i>C. canephora</i> helps us to clarify how auxins and cytokinins orchestrate the integration of different networks of plant metabolism and lead to the development of somatic embryos.…”
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Comprehensive transcriptomics and metabolomics reveal the coloring mechanism of purple Camellia tachangensis by Dejun Huang, Xiuling Deng, Yihan Wang, Qinfei Song, Suzhen Niu

“…In this study, the anthocyanin components and the corresponding molecular mechanisms in the purple buds of C. tachangensis ‘P113’ and C. sinensis ‘C8’ were performed comparative analysis by using the transcriptome and metabolome analysis. The results showed that the relative contents of anthocyanin related metabolites were significantly different in bud between ‘P113’ and ‘C8’. …”
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Transcriptomic Profiling of the Salt Tolerance Response in Roots of the Punica granatum ‘Fuanyihao’ by Chun Liu, Jinjin Li

“…To reveal the molecular mechanism of salt stress, we conducted transcriptome sequencing on samples of pomegranate (Punica granatum ‘Fuanyihao’) roots subjected to salt stress at different time periods and control conditions. …”
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Metabolomics and transcriptomics profiling of three Paris species with varied polyphyllin compositions by Ping Xu, Jia Chen, Qi Mi, Wenchun Li, You Lu, Wenxiu Luo, Mengwen Yu, Xuan Zhang, Zhenhua Tu, Honggao Xu, Guowei Zheng

“…Polyphyllins are the key components in Paris, with varying levels and compositions among different species. This study investigated polyphyllin compositions of 206 Paris samples from 16 different producing areas. 9 Paris polyphylla var. yunnanensis, 3 Paris fargesii, and 3 Paris forrestii were selected based on polyphyllin levels and composition for metabolome and transcriptome analysis. …”
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Transcriptome analysis of sugar beet in response to the pathogenic oomycete Aphanomyces cochlioides by Valentina Rossi, Louise Holmquist, Erik Alexandersson, Laura Grenville-Briggs

“…The transcriptome responses of two partially resistant and two susceptible sugar beet breeding lines, inoculated with three A. cochlioides isolates with different geographical origins have been investigated in this study. …”
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Time-resolved transcriptomics of S. cerevisiae and S. pastorianus in response to plasma membrane stresses by Yuta Yamazaki, Fumihiko Omura, Eiichiro Ono, Nozomu Kamada, Keiko Kono

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