A R1-type MYB CmREVEILLE2 regulates light-mediated chlorophyll biosynthesis and green color formation in chrysanthemum flowers by Jingjie Fang, Sitong Liu, Sijia Chen, Huijie Deng, Linxia Zhao, Xinwei Liang, Ziqiang Chen, Xiaoqin Zhang, Songwen Xu, Caiyun Wang, Jing Luo

“…A R1-type MYB transcription factor, CmREVEILLE2 (CmRVE2), was identified through transcriptomic analysis of flowers subjected to different light intensities (3,000 Lux for low light, LL; 6,000 Lux for moderate light, ML; and 12,000 Lux for high light, HL). …”
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Multi-Omics and Functional Insights into Triterpenoid Biosynthesis Pathways in <i>Neopicrorhiza scrophulariiflora</i> (Pennell) D.Y.Hong by Pinhan Zhou, Juan Wang, Chaohui Li, Lesong Li, Luyuan Duan, Weihao Wang, Xirui Liu, Khadija Tehseen Arshad, Yanli Liang, Yan Zhao

“…However, the molecular mechanisms of triterpenoid biosynthesis in <i>N. scrophulariiflora</i> remain unclear. Here, transcriptomic and metabolomic analyses were performed to investigate the triterpene content in different tissues and the expression patterns of key enzyme-encoding genes related to triterpenoid biosynthesis. …”
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PPM1J regulates meat quality feature and glycerophospholipids composition in broiler by modulating protein dephosphorylation by Manting Ma, Xin Yang, Yanan Zhang, Shuang Wang, Chenglong Jin, Weiguang Xia, Wei Chen, Bolin Cai, Chuntian Zheng

“…Here, metabolomics and transcriptomics were used to systematically identify the genetic regulation of differences in meat flavor among different broiler. …”
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The glutamate receptor gene GLR3.3: A bridge of calcium-mediated root development in poplar by Yi An, Ya Geng, Yu Liu, Xiao Han, Lichao Huang, Wei Zeng, Jin Zhang, Mengzhu Lu

“…In this study, we analyzed the morphological and transcriptomic variations of 84K poplar (Populus alba × P. glandulosa) in response to different calcium concentrations and found that low Ca2+ (1 mmol · L−1) promoted lateral root development, while deficiency (0.1 mmol · L−1 Ca2+) inhibited lateral root development. …”
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CHH demethylation in the ZmGST2 promoter enhances maize drought tolerance by regulating ROS scavenging and root growth by Xiaocui Yan, Mengjie Zhang, Yuan Zhong, Tinashe Zenda, Songtao Liu, Anyi Dong, Mengyu Kou, Jialong Liu, Nan Wang, Huijun Duan

“…In this study, using PEG6000 and 5-azadC to treat different drought-tolerant maize inbred lines (drought-tolerant R99 and drought-sensitive Mo17), combined with transcriptomic analysis, identified the gene ZmGST2 as being related to drought resistance. …”
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Significance of host antimicrobial peptides in the pathogenesis and treatment of acne vulgaris by Agata Lesiak, Paulina Paprocka, Urszula Wnorowska, Angelika Mańkowska, Grzegorz Król, Katarzyna Głuszek, Ewelina Piktel, Jakub Spałek, Jakub Spałek, Sławomir Okła, Sławomir Okła, Krzysztof Fiedoruk, Bonita Durnaś, Bonita Durnaś, Robert Bucki

“…., genetically distinct bacterial subgroups that play different roles in skin health and disease) diversity of the predominant skin bacterial commensal - Cutinbacterium acnes. …”
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Genome-wide identification and characterization of the bZIP family in the Mangrove Plant Kandelia obovata and its role in response to stress by Yuchong Yi, Yuting Qiu, Hongyao Hu, Dandan Qin, Hechen Huang, Taiping Chen, Wenqi Zha, Yingjia Shen

“…The expression patterns of KobZIP genes across different tissues and under various abiotic stress conditions were analyzed using transcriptomic data and experimental validation. …”
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Transcriptions of ACO and ACS genes are involved in nitrate-dependent root growth of maize seedlings by Guoqi Yao, Zhenwei Yan, Shijun Ma, Xia Liu, Juan Shan, Bing Cao, Xiaole Chen, Bingying Leng, Chunhua Mu

“…We discovered that ACO and ACS genes have different regulatory modes in response to nitrate provision. …”
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M1hot tumor-associated macrophages boost tissue-resident memory T cells infiltration and survival in human lung cancer by Eva M Garrido-Martin, Toby W P Mellows, James Clarke, Anusha-Preethi Ganesan, Oliver Wood, Angelica Cazaly, Gregory Seumois, Serena J Chee, Aiman Alzetani, Emma V King, Gareth Thomas, Peter S Friedmann, Pandurangan Vijayanand, Tilman Sanchez-Elsner

“…Immunohistochemistry related the distribution of TAM transcriptomic signatures to density of CD8+ tissue-resident memory T cells (TRM) in tumors and survival data from an independent cohort of 393 patients with lung cancer.Results TAMs have significantly different transcriptomic profiles from NTAMs with &gt;1000 differentially expressed genes. …”
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CAFs activated by YAP1 upregulate cancer matrix stiffness to mediate hepatocellular carcinoma progression by Wei Yan, Guo-hui Xiao, Li-juan Wang, Yan Zhou, Fa Yang, Kuan-hou Mou

“…By calculating intercellular communication probabilities and analyzing transcription factor activity, the functions and interactions of different CAF subsets were elucidated. Gene Ontology (GO) analysis was used to explore the functional roles of CAFs in distinct Yes-associated protein 1 (YAP1) groups. …”
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SNP rs615552 and lncRNA CDKN2B-AS1 influence brain cancer pathogenesis through multi-omic mechanisms by Zheng Ye, Jiaqi Yuan, Qianbei Yi, Peng Xu, Wenbin Liu

“…Bulk RNA-seq, spatial, and single-cell transcriptomic analyses revealed that CDKN2B-AS1 is predominantly expressed in malignant and dendritic cells (DCs), and is associated with DNA repair pathways in malignant cells and antigen presentation genes in DCs. …”
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Cyclic Peptide MV6, an Aminoglycoside Efficacy Enhancer Against <i>Acinetobacter baumannii</i> by Natalia Roson-Calero, Jimmy Lucas, María A. Gomis-Font, Roger de Pedro-Jové, Antonio Oliver, Clara Ballesté-Delpierre, Jordi Vila

“…Further research, including transcriptomic analysis, is essential to elucidate MV6’s role in enhancing netilmicin efficacy and its resistance mechanisms.…”
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Differential Mitochondrial Genome Expression of Four Skink Species Under High-Temperature Stress and Selection Pressure Analyses in Scincidae by Xuxiang Wu, Lemei Zhan, Kenneth B. Storey, Jiayong Zhang, Danna Yu

“…To validate these findings, transcriptomic profiling was conducted to assess mitochondrial protein-coding gene (PCG) expression patterns under thermal stress. …”
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Human Fibroblast Growth Factor 9 Induces Hair Follicle Cycle Transition via TGF-&beta;/BMP/Smad Pathway by Zhang B, He X, Guo Y, Zhao S, Lan J, Chen F, Wan L, Tian H, Xu X

“…Histological analysis revealed that intradermal injections of rhFGF9 enhanced hair follicle development. Transcriptomic analysis revealed that the mechanism underlying this effect might involve the transforming growth factor-β (TGF-β) signaling pathway. …”
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Genomic subtypes of non-muscle-invasive bladder cancer: guiding immunotherapy decision-making for patients exposed to aristolochic acid by Yun Peng, Yuxuan Song, Caipeng Qin, Mengting Ding, Zixiong Huang, Fei Wang, Yuchao HuangFu, Luping Yu, Yiqing Du, Tao Xu

“…We performed whole-exome sequencing (WES) and RNA sequencing (RNA-seq) to obtain detailed genomic and transcriptomic data. We subjected these datasets to genomic analysis and subtype analysis to gain valuable insights into NMIBC. …”
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Circular Nucleic Acids Act as an Oncogenic MicroRNA Sponge to Inhibit Hepatocellular Carcinoma Progression by Qianyi Zhang, Pengcheng Sun, Guang Hu, Xuanyao Yu, Wen Zhang, Xuan Feng, Lan Yu, Pengfei Zhang

“…Furthermore, we compared the immune effects in vivo of three different nucleic acid adsorption carriers, including commercial miRNA inhibitor, circDNA, and circRNA. …”
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Liposomal Nanoparticle Delivery of Ginkgo Flavone Glycosides Enhances SIRT1 Activation and Improves Diabetic Cardiomyopathy by Gao W, Chen R, Tong H, Wang Y, Liang L, Li Y, Yu H

“…Network pharmacology, transcriptomic analysis, and molecular docking studies were conducted to elucidate the key role of SIRT1 in inhibiting DCM progression. …”
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Single-cell characterization of the immune heterogeneity of pulmonary hypertension identifies novel targets for immunotherapy by Pan Jiang, Huai Huang, Mengshi Xie, Zilong Liu, Lijing Jiang, Hongyu Shi, Xiaodan Wu, Shengyu Hao, Shanqun Li

“…We demonstrated the transcriptomic features of different cell types in PAH patients. …”
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Common molecular links and therapeutic insights between type 2 diabetes and kidney cancer. by Reaz Ahmmed, Mohammad Amirul Islam, Md Taohid Hasan, Arnob Sarker, Md Ahad Ali, Md Saiful Islam, Mst Zafrin Sultana, Md Nurul Haque Mollah

“…The statistical LIMMA approach was used based web-tool GEO2R to detect differentially expressed genes (DEGs) through transcriptomics analysis. Then upregulated and downregulated DEGs for T2D and KC were combined to obtained shared DEGs (sDEGs) between T2D and KC. …”
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Virocell resource manipulation under nutrient limitation by Morgan M. Lindback, Cristina Howard-Varona, Jane Fudyma, Malak Tfaily, Matthew B. Sullivan, Melissa B. Duhaime

“…Using multi-omics approaches, we examined how two different viruses (PSA-HP1 and PSA-HS2) independently infecting the same marine heterotrophic bacterium (Pseudoalteromonas) respond to phosphorus limitation. …”
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