RNA binding proteins (RBPs) on genetic stability and diseases by Abdullahi Tunde Aborode, Ohilebo Abdulateef Abass, Shaibu Nasiru, Mary Ugunnushe Eigbobo, Sumana Nefishatu, Abdullahi Idowu, Zainab Tiamiyu, Aeshah A. Awaji, Nike Idowu, Babawale Roqeeb Busayo, Qasim Mehmood, Isreal Ayobami Onifade, Sodiq Fakorede, Ashraf Akintayo Akintola

“…RNA-binding proteins (RBPs) are integral components of cellular machinery, playing crucial roles in the regulation of gene expression and maintaining genetic stability. …”
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Deep Learning for Predicting Biomolecular Binding Sites of Proteins by Minjie Mou, Zhichao Zhang, Ziqi Pan, Feng Zhu

“…The rapid evolution of deep learning has markedly enhanced protein–biomolecule binding site prediction, offering insights essential for drug discovery, mutation analysis, and molecular biology. …”
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DNA–Protein Binding is Dominated by Short Anchoring Elements by Hong Chen, Yongping Xu, Hao Ge, Xiao‐Dong Su

“…This method allows for the direct identification of the dominant role of AEs from experimental data. Moreover, when integrated with genomic data, it reveals an energetic funnel around transcription factor binding sites (TFBSs), which is directly correlated with the density of AEs (AED). …”
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The next generation of transcription factor binding site prediction. by Anthony Mathelier, Wyeth W Wasserman

“…Moreover, using available TF-DNA affinity measurements for the Max TF, we demonstrate that TFFMs constructed from ChIP-seq data correlate with published experimentally measured DNA-binding affinities. Finally, TFFMs allow for the straightforward computation of an integrated TF occupancy score across a sequence. …”
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An Integrative Computational Approach for Identifying Cotton Host Plant MicroRNAs with Potential to Abate CLCuKoV-Bur Infection by Muhammad Aleem Ashraf, Imran Shahid, Judith K. Brown, Naitong Yu

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Ensembling methods for protein-ligand binding affinity prediction by Jiffriya Mohamed Abdul Cader, M. A. Hakim Newton, Julia Rahman, Akmal Jahan Mohamed Abdul Cader, Abdul Sattar

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Global analysis of small molecule binding to related protein targets. by Felix A Kruger, John P Overington

“…We report on the integration of pharmacological data and homology information for a large scale analysis of small molecule binding to related targets. …”
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Selective Enrichment of Hypermethylated DNA by a Multivalent Binding Platform by Ruben W. Kolkman, Loes I. Segerink, Jurriaan Huskens

“…In the here proposed method, a methyl binding domain (MBD) protein immobilized at a surface is used as a receptor for (hyper)methylated DNA. …”
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Roles of X-box binding protein 1 in liver pathogenesis by Jihoon Tak, Yun Seok Kim, Sang Geon Kim

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Allosteric binding sites in Rab11 for potential drug candidates. by Ammu Prasanna Kumar, Suryani Lukman

“…Although they are medically important, no previous study has found Rab11 allosteric binding sites where potential drug candidates can bind to. …”
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Proteome-wide determinants of co-translational chaperone binding in bacteria by Carla Verónica Galmozzi, Frank Tippmann, Florian Wruck, Josef Johannes Auburger, Ilia Kats, Manuel Guennigmann, Katharina Till, Edward P. O´Brien, Sander J. Tans, Günter Kramer, Bernd Bukau

“…Here, by integrating genome-wide selective ribosome profiling, single-molecule tools, and computational predictions using AlphaFold we show that the binding of the main E. coli chaperones involved in co-translational folding, Trigger Factor (TF) and DnaK correlates with “unsatisfied residues” exposed on nascent partial folds – residues that have begun to form tertiary structure but cannot yet form all native contacts due to ongoing translation. …”
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Competitive dCas9 binding as a mechanism for transcriptional control by Daniel A Anderson, Christopher A Voigt

“…Natural promoters use overlapping binding sites as a mechanism for signal integration, where the binding of one can block, displace, or augment the activity of the other. …”
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Odors drive feeding through gustatory receptor neurons in Drosophila by Hongping Wei, Thomas Ka Chung Lam, Hokto Kazama

Subjects: “…odor-taste multisensory integration…”
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A quantitative analysis of ligand binding at the protein-lipid bilayer interface by Allison Pearl Barkdull, Matthew Holcomb, Stefano Forli

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Model of Organizational Structure for University Institutes Binding with the Venezuelan Socioeconomic Reality by Rafael Pertuz Belloso

“…The present study is aimed at proposing a model of organizational structure for university institutes binding with the Venezuelan socioeconomic reality. …”
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Intra‐ and inter‐chromosomal interactions correlate with CTCF binding genome wide by Marco Botta, Syed Haider, Ian X Y Leung, Pietro Lio, Julien Mozziconacci

“…In this report, we use chromatin immunoprecipitation (ChIP) data that map protein‐binding sites on the genome, and Hi‐C data that map interactions between DNA fragments in the genome in an integrative approach. …”
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Binding the flows: Why trade is central for a global plastics treaty by Maria Ivanova, Jamel Zarrouk

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Identification of druggable binding sites and small molecules as modulators of TMC1 by Pedro De-la-Torre, Claudia Martínez-García, Paul Gratias, Matthew Mun, Paula Santana, Nurunisa Akyuz, Wendy González, Artur A. Indzhykulian, David Ramírez

“…Our pipeline successfully identified three potential drug-binding sites within the TMC1 pore, phospholipids, and key amino acids involved in the binding of several compounds, as well as FDA-approved drugs that reduced dye uptake in cultured cochlear explants. …”
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A Beautiful Bind: Phage Display and the Search for Cell-Selective Peptides by Babak Bakhshinejad, Saeedeh Ghiasvand

“…Phage display has advanced the discovery of peptides that selectively bind to a wide variety of cell surface molecules, offering new modalities to modulate disease-related protein–protein interactions (PPIs). …”
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POT1 stability and binding measured by fluorescence thermal shift assays. by Lynn W DeLeeuw, Robert C Monsen, Vytautas Petrauskas, Robert D Gray, Lina Baranauskiene, Daumantas Matulis, John O Trent, Jonathan B Chaires

“…The results from these assays provide thermodynamics details of POT1 folding, the sequence selectivity of its DNA binding and the thermodynamic profile for its binding to its preferred DNA binding sequence. …”
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