Information-Structure Annotation of the “Balanced Corpus of Contemporary Written Japanese” by Takuya Miyauchi, Masayuki Asahara, Natsuko Nakagawa, Sachi Kato

Get full text

Expanding kinetoplastid genome annotation through protein structure comparison. by Juan Manuel Trinidad-Barnech, José Sotelo-Silveira, Darío Fernández Do Porto, Pablo Smircich

“…Our pipeline enabled the assignment of structural similarity to a substantial portion of kinetoplastid proteins, improving current knowledge through annotation transfer. …”
Get full text

IDEA: Image database for earthquake damage annotationZenodo by Ilaria Senaldi, Chiara Casarotti, Martina Mandirola, Alessio Cantoni

Subjects: “…Structural damage dataset…”
Get full text

LCRAnnotationsDB: a database of low complexity regions functional and structural annotations by Joanna Ziemska-Legiecka, Patryk Jarnot, Sylwia Szymańska, Dagmara Błaszczyk, Alicja Staśczak, Hanna Langer-Macioł, Kinga Lucińska, Karolina Widzisz, Aleksandra Janas, Hanna Słowik, Wiktoria Śliwińska, Aleksandra Gruca, Marcin Grynberg

“…LCRAnnotationsDB aims to consolidate knowledge about LCRs and store relevant annotations in a single place. To unify redundant annotations, we assigned them categories based on similarity in function, protein structure, and biological process. …”
Get full text

Improved enzyme functional annotation prediction using contrastive learning with structural inference by Yuxin Yang, Abby Jerger, Song Feng, Zixu Wang, Christina Brasfield, Margaret S. Cheung, Jeremy Zucker, Qiang Guan

“…However, the majority of these methods have primarily focused on either amino acid sequence data or protein structure data, neglecting the potential synergy of combining both modalities. …”
Get full text

Wide-Coverage Deep Statistical Parsing Using Automatic Dependency Structure Annotation by Aoife Cahill, Michael Burke, Ruth O'Donovan, Stefan Riezler, Josef van Genabith, Andy Way

Get full text

An open-source platform for structured annotation and computational workflows in digital pathology research by Luca Lianas, Mauro Del Rio, Luca Pireddu, Oskar Aspegren, Francesca Giunchi, Michelangelo Fiorentino, Simone Leo, Renata Zelic, Per Henrik Vincent, Nicolas Destefanis, Daniela Zugna, Lorenzo Richiardi, Andreas Pettersson, Olof Akre, Francesca Frexia

“…Its main features include: (1) structured, multi-label morphological and clinical image annotation; (2) support for controlled but customisable annotation protocols; (3) dedicated annotation tools to facilitate enhanced accuracy, efficiency and consistency in the annotation process; and (4) workflow-based computational analysis with integrated provenance tracking. …”
Get full text

Functional and Structural Annotation of Uncharacterized Lysine Methyltransferase Proteins in <i>Candida auris</i>  by Himanshu Kishore Prasad

Get full text

Étudier des structures de discours : préoccupations pratiques et méthodologiques by Marie-Paule Jacques, Thierry Poibeau

Get full text

An Empirical Approach to the Signalling of Enumerative Structures by Lydia-Mai Ho-Dac, Cécile Fabre, Marie-Paule Péry-Woodley, Josette Rebeyrolle, Ludovic Tanguy

Subjects: “…enumerative structures…”
Get full text

Functional Annotation of Some Hypothetical Genes in the Schistosoma Parasite Based on Reciprocal Best Structural-hit Relationship by Arezou Askari Rad, Jamal Fayazi, Mohammad Taghi Beigi Nassiri, Alireza Hasani Baferani

Subjects: Get full text

Cross-Modal Weakly Supervised RGB-D Salient Object Detection with a Focus on Filamentary Structures by Yifan Ding, Weiwei Chen, Guomin Zhang, Zhaoming Feng, Xuan Li

“…Current weakly supervised salient object detection (SOD) methods for RGB-D images mostly rely on image-level labels and sparse annotations, which makes it difficult to completely contour object boundaries in complex scenes, especially when detecting objects with filamentary structures. …”
Get full text

Structural, Functional and Inhibitory Annotations of Lumpy Skin Disease Virus Hypothetical Protein LSDV004: An In‐Silico Study by F. M. Yasir Hasib, Md. Shafiqul Islam

Get full text

In Silico Functional Annotation and Structural Characterization of Hypothetical Proteins in Bacillus paralicheniformis and Bacillus subtilis Isolated from Honey by Ahmer Bin Hafeez, Subrahmanyam Sappati, Radoslaw Krzemieniecki, Randy Worobo, Piotr Szweda

Get full text

AI-Powered Synthesis of Structured Multimodal Breast Ultrasound Reports Integrating Radiologist Annotations and Deep Learning Analysis by Khadija Azhar, Byoung-Dai Lee, Shi Sub Byon, Kyu Ran Cho, Sung Eun Song

“…Key modules in our method include image classification using visual features (ICVF), type classification via deep learning (TCDL), and automatic report structuring and compilation (ARSC). Experiments showed that the proposed method reduced the average report generation time to 3.8 min compared to manual processes, even when using relatively low-spec hardware. …”
Get full text

Prediction of secreted uncharacterized protein structures from Beauveria bassiana ARSEF 2860 unravels novel toxins-like families by Peter F. Farag, Aya A. Elsisi, Esraa W. Elabd, Jana J. Sadek, Nada H. Mousa, Rawan M. Zaky, Sara M. Ahmed

Subjects: Get full text

Pangenome-scale annotation of mycobacteriophages for dissecting phage–host interactions based on a sequence clustering and structural homology analysis strategy by Xiao Guo, Zheng-Guo He

“…Mycobacteriophages constitute the largest genome-sequenced phage group; however, the vast majority of these phage proteins have not yet been effectively annotated. In this study, we employed a structure-based similarity search approach to improve protein annotation. …”
Get full text

The Information-Structural Status of Adjuncts: A Question-under-Discussion-Based Approach by Lisa Brunetti, Kordula De Kuthy, Arndt Riester

Subjects: “…information structure…”
Get full text

The golden genome annotation of Ganoderma lingzhi reveals a more complex scenario of eukaryotic gene structure and transcription activity by Lining Wang, Peiqi Shi, Zhaohua Ping, Qinghua Huang, Liqun Jiang, Nianfang Ma, Qingfu Wang, Jiang Xu, Yajie Zou, Zhihai Huang

“…However, accumulating evidence suggests a more complex landscape of gene structure and transcription. Ganoderma lingzhi, a model medicinal fungus, currently lacks high-quality genome annotation, hindering genetic studies. …”
Get full text

mineMS2: annotation of spectral libraries with exact fragmentation patterns by Alexis Delabrière, Coline Gianfrotta, Sylvain Dechaumet, Annelaure Damont, Thaïs Hautbergue, Pierrick Roger, Emilien L. Jamin, Olivier Puel, Christophe Junot, François Fenaille, Etienne A. Thévenot

Get full text