Complete Colombian Caribbean loggerhead turtle mitochondrial genome: tRNA structure analysis and revisited marine turtle phylogeny by Javier Hernández-Fernández, Katherin Otálora

“…In addition, the first approach related to t-RNAs 2D and 3D structure analysis in this mitogenome was conducted, leading to observed unique features in two tRNAs (tRNATrp and tRNALeu). …”
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The first complete mitochondrial genome of Curcuma amarissima (Zingiberaceae): insights into multi-branch structure, codon usage, and phylogenetic evolution by Heng Liang, Jiabin Deng, Yidan Wang, Gang Gao, Ruiwu Yang

“…The C. amarissima mitogenome features a unique multi-branched structure, spanning 6,505,655 bp and consisting of 39 distinct segments. …”
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Genetic structure revealed by SNPs for wild rice Zizania latifolia along a latitudinal gradient and its conservation implications by Godfrey Kinyori Wagutu, Xiangrong Fan, Miriam Chepkwemoi Tengwer, Yanling Liu, Wei Li, Yuanyuan Chen, Wei Wang

“…For the plants with important ecological or economic values, understanding the genetic structure of their populations is crucial to inform conservation strategies. …”
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MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function by Bharti Aggarwal, Wojciech Maciej Karlowski, Przemyslaw Nuc, Artur Jarmolowski, Zofia Szweykowska-Kulinska, Halina Pietrykowska

“…Overall, our research sheds light on liverwort-specific miRNA gene structure, provides new data on their biogenesis and expression regulation. …”
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Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics by Jian Zhou, Ying Liu, Tao Gu, Jingzhu Zhou, Fengming Chen, Shijun Li

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PHYTOPLANKTON SPECIES COMPOSITION OF THE RUSSIAN SECTOR OF THE CASPIAN SEA by A. Sh. Gasanova, K. M. Guseynov, M. K. Guseynov

“…Annotation. The taxonomic structure and the lists of species of the phytoplankton community in the Russian sector of the Caspian Sea have been presented. …”
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Chromatin interaction-based annotation of regulatory elements reveals dynamic promoter-enhancer interactions in lymphocyte development by Johanna Tingvall-Gustafsson, Christina T. Jensen, Jonas Ungerbäck, Mikael Sigvardsson

“…Summary: Stage- and lineage-specific gene expression patterns are controlled by a complex interplay between transcription factors, the epigenetic landscape, and the three-dimensional (3D) structure of the DNA. The 3D structure allows for the formation of DNA loops that juxtaposition distal regulatory elements to the promoters, allowing for tight control of gene expression. …”
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Chromosome-scale genome assembly and annotation of two geographically distinct strains of malaria vector Anopheles albimanus by Dieunel Derilus, Gareth D. Weedall, Michael W. Vandewege, Dhwani Batra, Mili Sheth, Lori A. Rowe, Ananias A. Escalante, Audrey Lenhart, Lucy Mackenzie Impoinvil

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ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot. by Sabrina de Azevedo Silveira, Sabrina de Azevedo Silveira, Raquel Cardoso de Melo-Minardi, Carlos Henrique da Silveira, Marcelo Matos Santoro, Wagner Meira

“…Our proposal is intended to be an automatic complementary method (that can be used together with other techniques like the ones based on protein sequence and structure) that helps to improve the quality and reliability of enzyme annotations over time, suggesting possible corrections, anticipating annotation changes and propagating the implicit knowledge for the whole dataset.…”
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A hybrid machine learning framework for functional annotation of mitochondrial glutathione transport and metabolism proteins in cancers by Luke Kennedy, Jagdeep K. Sandhu, Mary-Ellen Harper, Miroslava Cuperlovic-Culf

“…Existing functional annotation approaches from machine (ML) or deep learning (DL) models based only on protein sequences, were unable to annotate functions in biological contexts. …”
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An algorithm for annotation and classification of T. cruzi MASP sequences: towards a better understanding of the parasite genetic variability by Aldana Alexandra Cepeda Dean, Luisa Berná, Carlos Robello, Carlos Andrés Buscaglia, Virginia Balouz

“…Conclusions This novel pipeline automates the annotation of MASPs, a key surface protein family unique to T. cruzi, improving genome annotation and enabling robust comparative analyses. …”
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An Annotated Multi-Site and Multi-Contrast Magnetic Resonance Imaging Dataset for the study of the Human Tongue Musculature by Fernanda L. Ribeiro, Xiangyun Zhu, Xincheng Ye, Sicong Tu, Shyuan T. Ngo, Robert D. Henderson, Frederik J. Steyn, Matthew C. Kiernan, Markus Barth, Steffen Bollmann, Thomas B. Shaw

“…This dataset will benefit researchers across domains interested in the structure and function of the tongue in health and disease. …”
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GBNSS: A Method Based on Graph Neural Networks (GNNs) for Global Biological Network Similarity Search by Yi Wang, Feng Zhan, Cuiyu Huang, Yiran Huang

“…Additionally, GBNSS is a topology-free biological network similarity search method with an arbitrary network structure. The experimental results on four benchmark datasets show that GBNSS outperforms the existing methods in terms of computational efficiency and search accuracy. …”
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“Diwan”: Constructing the Largest Annotated Corpus for Arabic Poetry by Badriyya B. Al-Onazi, Wadee A. Nashir, Asma A. Al-Shargabi

“…“Diwan” comprises approximately 14 million verses of poetry across 16 major categories and includes detailed annotations related to poetic genres, prosodic structures, thematic content, linguistic patterns, and poet-specific metadata. …”
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Continuous sleep depth index annotation with deep learning yields novel digital biomarkers for sleep health by Songchi Zhou, Ge Song, Haoqi Sun, Deyun Zhang, Yue Leng, M. Brandon Westover, Shenda Hong

“…Our study underscores the utility of SDI in revealing more detailed sleep structures and yielding novel digital biomarkers for sleep medicine.…”
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FDIE: a graph-based framework for extracting design information from annotated building facade images by Yuexia Hu, Junjie Wei, Si Zhang, Shuyu Liu

“…These structured data provide an important basis for intelligent analysis of composition pattern. …”
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Hematoxylin and Eosin-stained whole slide image dataset annotated for skin tissue segmentationMendeley Data by Anum Abdul Salam, Muhammad Zeeshan Asaf, Muhammad Usman Akram, Noah Musolff, Samavia Khan, Bassem Rafiq, Babar Rao

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AGE-RELATED AND LOCATION PECULIARITIES OF TOOTH ENAMEL RESTITUTION by А. А. Udod, А. S. Voronina

“… Annotation. Relevance of the topic. Structural and functional acid resistance of enamel is evaluated by the test of resistance enamel, the essence of which is to assess the staining intensity of the enamel portion of the upper central incisor in equator area after pre-dosed acid exposure. …”
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A novel structural modeling magnitude and orientation radiomic descriptor for evaluating response to neoadjuvant therapy in rectal cancers via MRI by Charlems Alvarez-Jimenez, Jacob T. Antunes, Thomas DeSilvio, Zhouping Wei, Marwa Ismail, Joseph E. Willis, Emily Steinhagen, Andrei Purysko, David Liska, Smitha Krishnamurthi, Marka Crittenden, Michael Gough, Kristina Young, Anant Madabhushi, Eduardo Romero, Pallavi Tiwari, Satish E. Viswanath

“…The integrated StODeO-texture signature demonstrated robustness across annotation sources and imaging variations, intuitive modeling of therapy-associated structural changes, and statistical associations with tumor-immune biology, including macrophages and CD8+ T-cells from multiplexed biopsy analysis. …”
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A Radiologist's Perspective of Medical Annotations for AI Programs: The Entire Journey from Its Planning to Execution, Challenges Faced by Anuradha Rao

“…While annotation may be perceived as passive work of labeling a certain anatomy, the radiologist plays a more important role in this task apart from marking the structures needed. …”
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