Defensive responses of most antioxidant genes in the freshwater dinoflagellate Palatinus apiculatus to cadmium stress and their implications by Quynh Thi Nhu Bui, Taehee Kim, Han-Sol Kim, Jang-Seu Ki

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Whole-transcriptome sequencing reveals the effects of acupuncture on early embryos post-IVF-ET in poor ovarian response by Jianheng Hao, Yuemeng Zhao, Xuan Liu, Huichao Xu, Liying Liu, Haijun Wang, Ying Lan, Laixi Ji

“…Abstract Background Poor ovarian response (POR) refers to a pathological condition where the ovaries respond inadequately to gonadotropin stimulation during ovulation induction. …”
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New insights into the salt-responsive regulation in eelgrass at transcriptional and post-transcriptional levels by Huan Zhao, Huan Zhao, Xu Dong, Xu Dong, Dazuo Yang, Dazuo Yang, Qingchao Ge, Qingchao Ge, Peng Lu, Peng Lu, Chang Liu, Chang Liu

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Temporal dynamics of the multi-omic response reveals the modulation of macrophage subsets post-myocardial infarction by Yuan Wu, Panting Wei, Bin Li, Jiaqi He, Ting Zhou, Qingbin Hou, Yunhao Yu, Jingjin Hou, Chenghui Yan, Yaling Han

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Transcriptomic profiling reveals SARS-CoV-2-infected humanized MHC mice recapitulate human post vaccination immune responses by Siyue Li, Siyue Li, Xuelian Han, Ruolan Hu, Ruolan Hu, Keyu Sun, Min Li, Yuan Wang, Guangyu Zhao, Mengzhe Li, Huahao Fan, Huahao Fan, Huahao Fan, Huahao Fan, Qi Yin

“…MethodsThis study systematically characterized immune responses in SARS-CoV-2-challenged hMHC mice lung tissues through comparative transcriptomic profiling, combined with functional enrichment and PPI network analyses.ResultsKey findings demonstrate that hMHC mice exhibit enhanced immunological activation relative to wild-type controls, particularly in IFN-γ signaling pathways and neutrophil mobilization dynamics that closely parallel human post-vaccination responses. …”
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The light responsive transcriptome of the zebrafish: function and regulation. by Benjamin D Weger, Benjamin D Weger, Meltem Sahinbas, Georg W Otto, Philipp Mracek, Olivier Armant, Dirk Dolle, Kajori Lahiri, Daniela Vallone, Laurence Ettwiller, Robert Geisler, Nicholas S Foulkes, Thomas Dickmeis

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Progress in Transcriptomics and Metabolomics in Plant Responses to Abiotic Stresses by Tao Yu, Xuena Ma, Jianguo Zhang, Shiliang Cao, Wenyue Li, Gengbin Yang, Changan He

“…Over the past decade, advancements in high-throughput sequencing and mass spectrometry have propelled transcriptomics and metabolomics as pivotal post-genomic disciplines, offering unprecedented opportunities to dissect molecular mechanisms underlying stress responses. …”
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Genome-wide transcriptomic response of whole blood to radiation by Ahmed Salah, Daniel Wollschläger, Maurizio Callari, Heinz Schmidberger, Federico Marini, Sebastian Zahnreich

“…Abstract Blood cells are affected in nearly all ionizing radiation exposure scenarios. Whole transcriptome data offer detailed insights into blood’s radiation response, crucial for radiotherapy and biodosimetry. …”
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Transcriptomic characterization of temperature stress responses in larval zebrafish. by Yong Long, Linchun Li, Qing Li, Xiaozhen He, Zongbin Cui

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Transcriptome responses to Ralstonia solanacearum infection in tetraploid potato by Zhuo Chen, Shunwei Shao, Xi Zhu, Yu Zhang, Zhendong Lan, Hui Jin

“…., superoxide dismutase, catalase, peroxidase, phenylalanine ammonia-lyase, and polyphenol oxidase) contribute to R. solanacearum resistance in Huashu No. 12. Transcriptome sequencing reveals 659 differentially expressed genes between the two varieties, with the ethylene responsive factor family containing the most differentially expressed genes. …”
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Unravelling the transcriptomic characteristics of bronchoalveolar lavage in post-covid pulmonary fibrosis by Mohammad Shadab Ali, Vijay Hadda, Sonia Verma, Anita Chopra, Saurabh Mittal, Karan Madan, Pawan Tiwari, Tejas Menon Suri, Anant Mohan

“…Abstract Background Post-Covid Pulmonary Fibrosis (PCPF) has emerged as a significant global issue associated with a poor quality of life and significant morbidity. …”
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Tissue-Specific Transcriptomic Responses to Avian Reovirus Inoculation in Ovo by Zubair Khalid, Shahna Fathima, Ruediger Hauck

“…Transcriptomic profiling revealed the intestines mounted an extensive gene expression response, implicating early immune activation. …”
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Transcriptomic difference analysis of Meyerozyma guilliermondii in response to salt stress by CAO Xuan, ZHENG Xiaodong

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A spatial transcriptomic atlas of the host response to oropharyngeal candidiasis by Sunna Nabeela, Hayden McSwiggin, Rubens Daniel Miserani Magalhaes, Eliciane Cevolani Mattos, Mohammad Mannan, John T. Dillon, Ashley Barbarino, Eman G. Youssef, Shakti Singh, Wei Yan, Ashraf S. Ibrahim, Heather R. Conti, Priya Uppuluri

“…ABSTRACT Oropharyngeal candidiasis (OPC) caused by the fungus Candida albicans triggers a robust inflammatory response that rapidly eliminates the bulk of the fungal load in the oral mucosa. …”
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Transcriptomic Response of White Lupin Roots to Short-Term Sucrose Treatment by Proyasha Roy, Shrey Sethi, James New, Kristina Mae Lorilla, Karen Maleski, Allan Ancheta, Claudia Uhde-Stone

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Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana by Gwonjin Lee, Charlotte N. DiBiase, Beibei Liu, Tong Li, Austin G. McCoy, Martin I. Chilvers, Lianjun Sun, Dechun Wang, Feng Lin, Meixia Zhao

“…In this study, we investigated transcriptomic and epigenetic responses of two resistant (Colfax and NE2701) and two susceptible (Williams 82 and Senaki) soybean lines at four time points (2, 4, 8, and 16 h post inoculation [hpi]) after P. sansomeana inoculation. …”
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Identification of the Genomics and Transcriptomics Regulators of the DNA Damage Response in Breast Cancer by Mehdi Sadeghi, Mohammad Reza Karimi, Amir Hossein Karimi

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Time course transcriptome changes in Shewanella algae in response to salt stress. by Xiuping Fu, Duochun Wang, Xiling Yin, Pengcheng Du, Biao Kan

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Transcriptomic and metabolomic profiling of the potato plant response to zebra chip disease. by Margaret A Carpenter, Tonya J Frew, Helen L Boldingh, Simona Nardozza, Martin L Shaw, Susan J Thomson, Rebecca D Cooper, Gail M Timmerman-Vaughan

“…Zebra chip disease of potato is caused by a bacterial pathogen, 'Candidatus Liberibacter solanacearum', vectored by the tomato potato psyllid (Bactericera cockerelli Sulc.). The plant response to the disease was explored using a combined transcriptomic and metabolomic approach. …”
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Transcriptomic Profiling of the Salt Tolerance Response in Roots of the Punica granatum ‘Fuanyihao’ by Chun Liu, Jinjin Li

“…In these enriched pathways, plant hormone signal transduction and MAPK pathway-plant were the most notable. In total, abundant salt-stress response DEGs and pathways between pomegranate root systems treated at different times were identified, which promotes the understanding of salt-stress response mechanisms and are beneficial for improving a salt-resistance molecular breeding in pomegranate.…”
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