Unraveling hereditary breast cancer susceptibility: a systems biology approach on GEO datasets with functional genomic insights and implications for traditional Chinese medicine by Elham Amjad, Babak Sokouti

“…Results Following a systematic review and analysis using Gene Expression Omnibus datasets and various systems biology tools, we identified 16 important differentially expressed genes. …”
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Transcriptome Remodeling and Adaptive Preservation of Muscle Protein Content in Hibernating Black Bears by Vadim B. Fedorov, Arthur Garreau, Øivind Tøien, Brian M. Barnes, Anna V. Goropashnaya

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Genome-wide analysis of the S-phase kinase-association protein 1 (ClSKP1) family and the role of S-RNase targeting by an SCF (Cullin1-SKP1-F-box) complex in the self-incompatibilit... by Yuze Li, Wei Lin, Jiawei Zhu, Moying Lan, Cong Luo, Yili Zhang, Rongzhen Liang, Liming Xia, Wangli Hu, Xiao Mo, Guixiang Huang, Xinhua He

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Dissecting Cytophagalysin: Structural and Biochemical Studies of a Bacterial Pappalysin-Family Metallopeptidase by Eva Estevan-Morió, Juan Sebastián Ramírez-Larrota, Enkela Bushi, Ulrich Eckhard

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Identification and validation of differentially expressed genes in allergic asthma pathogenesis using whole-transcriptome sequencing by Fang Cui, Rui Liu, Li Wang, Jing He, Yanxia Xu

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Bergamot and Olive Extracts as Beer Ingredients: Impact on Cell Viability, Reactive Oxygen Species, and RNA Expression of Antioxidant Enzymes by Maria Laura Matrella, Bruna Amenta, Francesco Canino, Angela Maffia, Tiziana Cocco, Mariateresa Russo, Adele Muscolo

“…This study explores the incorporation of bergamot juice and olive extract as functional ingredients in craft beer and their effects on antioxidant activity and cellular oxidative stress. …”
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Genome-wide identification and analysis of Rop GTPase family members reveal their potential functions in biotic stress in potato (Solanum tuberosum L.) by Zhida Liu, Guochao Xuanyuan, Shuqing Yang, Miru Du, Xiaoluo Zhang, Tingting Bao, Zhiwei Zhang, Wenbing Zhang, Jun Zhao

“…Abstract Background Rop (RHO of plants) proteins are the plant-specific subfamily of RHO small GTP-binding proteins and act as a molecular switch to converge on a wide range of upstream signals and elicit downstream signaling cascades involving in modulating developmental processes and managing environmental stress. Although the function of Rops has been well studied in many plant species, the research conducting on Rops in potato is limited. …”
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Genome-wide characterization of the BBX gene family in perennial ryegrass and functional insights into the potentiality of LpBBX3 in drought and salt tolerance by Qingchun Liu, Yi Song, Yanfeng Liu, Xiao Xu, An Shao, Meng Wei, Yang He, Xinpei Zhang, Wei Wang

“…However, comprehensive characterization of the BBX gene family in perennial ryegrass has not been performed, and their potential functions in response to abiotic stress remain unclear. …”
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Identification of prognostic hub genes and functional role of BAIAP2L2 in prostate cancer progression: a transcriptomic and experimental study by Xiangyang Zhan, Xiangyang Zhan, Xiangyang Zhan, Xiangyang Zhan, Wenkai Wang, Jie Lian, Yichun Li, Jianyi Gu, Jianyi Gu, Jianyi Gu, Jianyi Gu, Dongdong Guo, Dongdong Guo, Dongdong Guo, Dongdong Guo, Dongliang Xu, Dongliang Xu, Dongliang Xu, Dongliang Xu, Guanqun Ju, Guanqun Ju, Guanqun Ju, Guanqun Ju

“…BackgroundProstate cancer (PCa) is a prevalent malignancy in men, and understanding its molecular mechanisms is crucial for identifying therapeutic targets.MethodsTranscriptomic data from prostate tumors and matched healthy tissues were obtained from The Cancer Genome Atlas (TCGA). Differential expression analysis using the DESeq2 algorithm identified differentially expressed genes (DEGs). …”
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Preparation of polyclonal antibodies against the EIL3 protein and its expression in soybean seedlings by CHENG Yunqing, WU Zhaoyang, LI Yujie, BAN Meihan, LIU Jianfeng

“…The aim of this study was to prepare EIL3 antibodies, verify their effectiveness and preliminarily explore the biological function of EIL3 in the development of soybean seedlings. …”
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Molecular functionality and self-assembled polymer compositions

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Chemical modification of graphene for functional polymer nanocomposites by J. Seppala, N. D. Luong

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Macro-micro relationship in nanostructured functional composites by A. S. Luyt, A. Zanotto, A. Spinella, G. Nasillo, E. Caponetti

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The transcriptional coordination of functional gene clusters is dependent on multiple chromatin remodelers in a haploid strain of the budding yeast, Saccharomyces cerevisiae by Abtsam A. Baadani, Gabrielle F. Coon, Christopher Bui, Mary C. Chidester, Reem S. Eldabagh, James T. Arnone

Subjects: “…functional gene clusters…”
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Genome-wide identification and functional characterization of LBD gene family in four Cymbidium species (Orchidaceae) and potential regulatory role of CsiLBD27 in floral developmen... by Yonglu Wei, Zengyu Lin, Jianpeng Jin, Wei Zhu, Jie Gao, Jie Li, Qi Xie, Chuqiao Lu, Genfa Zhu, Fengxi Yang

“…Abstract Background The Lateral Organ Boundaries Domain (LBD) gene family, encompassing plant-specific LOB domain proteins, plays essential roles in various aspects of plant growth and development, and has continuously diversified its functions across numerous species. However, studies on LBD genes in the Orchidaceae family remain limited. …”
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CXCR4 is a response gene for parathyroid hormone which affects osteoblast and osteoclast function in vitro by Beatriz Larraz-Prieto, Louise Hjorth Lind, Jacob Bastholm Olesen, Asim Azfer, Morten Svarer Hansen, Morten Frost, Abbas Jafari, Stuart H. Ralston, Kent Søe, Nerea Alonso

“…Conclusion: Our results suggest that CXCR4 is a responsive gene to TPTD treatment, involved in the regulation of osteoblast and osteoclast generation and function. Further in vivo studies are required to confirm this role, and to determine whether pharmacological strategies targeting CXCR4 could potentially improve the treatment outcome for osteoporotic patients. …”
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Deciphering the dynamic expression network of fiber elongation and the functional role of the GhTUB5 gene for fiber length in cotton based on an introgression population of upland cotton by Jianjiang Ma, Liupeng Yang, Yuanyue Dang, Kashif Shahzad, Jikun Song, Bing Jia, Li Wang, Juanjuan Feng, Nuohan Wang, Wenfeng Pei, Man Wu, Xuexian Zhang, Jinfa Zhang, Jianyong Wu, Jiwen Yu

“…Methods: Coexpression analyses of 277 developing fiber transcriptomes integrated with QTL mapping using 250 introgression lines of different FL phenotypes were conducted to identify genes related to fiber elongation. The function of GhTUB5 was determined by ectopic expression of two TUB5 alleles in Arabidopsis and knockout of GhTUB5 in upland cotton. …”
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Unveiling functionality and conducting two-sample mendelian randomization on WGCNA-identified oxidative stress-related hub genes in metabolic dysfunction-associated fatty liver dis... by Qian Zhu, Jiaqi Liu, Wuxuan Mei, Changchun Zeng

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Genome-wide identification of GDPD gene family in foxtail millet (Setaria italica L.) and functional characterization of SiGDPD14 under low phosphorus stress by Chaomin Meng, Haojie Guo, Cheng Wang, Furong Yang, Bing Du

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Tissue-Specific Expression Analysis and Functional Validation of <i>SiSCR</i> Genes in Foxtail Millet (<i>Setaria italica</i>) Under Hormone and Drought Stresses, and Heterologous Expression in <i>Arabidopsis</i> by Yingying Qin, Ruifu Wang, Shuwan Chen, Qian Gao, Yiru Zhao, Shuo Chang, Mao Li, Fangfang Ma, Xuemei Ren

“…Co-expression network analysis revealed that there is a correlation between <i>SiSCR</i> genes and other functional genes. …”
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