A Gene Ontology-Based Pipeline for Selecting Significant Gene Subsets in Biomedical Applications by Sergii Babichev, Oleg Yarema, Igor Liakh, Nataliia Shumylo

“…The pipeline employs the non-parametric Kruskal–Wallis test to identify differentially expressed genes, followed by dual enrichment analysis using both Fisher’s exact test and the Kolmogorov–Smirnov test across three GO categories: Biological Process (BP), Molecular Function (MF), and Cellular Component (CC). Genes associated with GO terms found significant by both tests were used to construct multiple gene subsets, including subsets based on individual categories, their union, and their intersection. …”
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Computation Simulation Research of Bushen Zhuangjin Decoction on Multi-target Effects in Delaying Cataplasia of Articular Cartilage by Chunsong ZHENG, Xiaojie XU, Suixin HUANG, Hongzhi YE

“…BSZJD compound-target network of delaying cataplasia of articular cartilage was constructed. The functional characteristic of BSZJD was studied by biological network.Results:Total of potential active compounds was 106, which mainly belong to saponins, and 33 compounds among them had good interaction with one target, while 40 and 33 compounds had good interaction with two targets and more than two targets, respectively. …”
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Circular RNAs related to skeletal muscle atrophy in diabetic mouse model by YANG Lei, WANG Yun, DENG Fang, XU Te, GOU Deming, ZHOU Wei, HU Zhangli, ZOU Xianghui

“…Results showed that, compared with the same tissue of normal isogenic background mice, the gastrocnemius muscle of diabetic mice showed: (a) the areas of muscle fiber were significantly reduced, and the grasping power and motor function were decreased; (b) there were 1 403 differentially expressed circRNAs in skeletal muscles of diabetes model, of which 690 were up-regulated and 713 were down-regulated; and (c) these disease related candidate circRNAs matched parent genes were revealed by the functional enrichment analyses of gene ontology (GO) and kyoto encyclopedia of genes and genomes (KEGG). …”
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Mechanism of DNASE1L3 delaying renal fibrosis by inhibiting PI3K-AKT signaling pathway by WEI Xiao, YU Hong, YUAN Yuan, KUANG Qihui, WANG Xiong, YANG Jun, LUO Pengcheng

“…GEO database combined with GO and KEGG pathway enrichment were used to analyze the possible interaction genes and functional analysis of DNASE1L3. The function and mechanism of renal fibrosis were studied in vitro by transient transfection of DNASE1L3 knockdown or overexpression in HK-2 cell fibrosis model. …”
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Enumeration Degrees of the Bounded Sets by Boris Y. Solon

“…The term ``total enumeration degree'' is related to the fact that the e-degree is total if and only if it contains a graph of some total function. In a number of works by the author and a group of mathematicians from the University of Wisconsin-Madison, the so-called ``graph-cototal enumeration degrees'' were considered, i.e. e-degrees containing the complement of the graph of some total function $f(x)$. …”
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The Fuzziness of Fuzzy Ideals by Amer Himza Almyaly

“…Consequently, in this paper we constructing a fuzziness function which defined on fuzzy sets and assigns membership grade for every fuzzy set whose it backing set are crisp ideal. …”
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Education Building Maintenance Priority Strategy Consider Safety Condition Using Analytical Hierarchy Process (AHP) by Muhammad Faizal Ardhiansyah Arifin, Yoga Aditya, Agung Budiwirawan, Agung Sutarto, Arie Taveriyanto

“…Buildings with component degradation are a common challenge for all construction companies across the world. There are various building's components that it is challenging for construction companies to manage them all at once. …”
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Design and validation of a programmable dual-tunnel soft pneumatic origami actuator with a large maximum shrinkage rate for reciprocating motion by R. Xu, R. Xu, R. Xu, Q. Meng, Q. Meng, Q. Meng, Q. Xie, Q. Xie, Q. Xie, Y. Zheng, Y. Zheng, Y. Zheng, C. Fei, C. Fei, C. Fei, V. Parenti Castelli, H. Yu, H. Yu, H. Yu

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Exploring seed characteristics and performance through advanced physico-chemical techniques by Dhanalakshmi Vadivel, Rania Djemal, Jessica García, Andrea Pagano, Rahma Trabelsi, Maroua Gdoura-Ben Amor, Safa Charfeddine, Siwar Ghanmi, Ibtisem Khalifa, Mariem Rekik, Fatma Amor, Chantal Ebel, Radhouane Gdoura, Amine Elleuch, Alma Balestrazzi, Anca Macovei, Moez Hanin, Daniele Dondi

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Switch lists in the landscape of knowledge representation languages by Ondrej Cepek

“…A switch-list representation (SLR) of a Boolean function is a compressed truth table representation of a Boolean function in which only the function value of the first row in the truth table and an ordered list of switches are stored. …”
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Machine learning driven multi-omics analysis of the genetic mechanisms behind the double-coat fleece formation in Hetian sheep by Yanwei Zhang, Wenrong Li, Xinming Xu, Mengwan Xie, Liping Tang, Peiyu Zheng, Nannan Song, Lijuan Yu, Jiang Di

“…PPI network analysis and machine learning identified IRF2BP2 and EGFR as key functional genes associated with coat fleece type.DiscussionThis study enhances understanding of the genetic mechanisms governing double-coated fleece formation in Hetian sheep. …”
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The Role of Sequencing Economics in Agglomeration: A Contrast with Tinbergen’s Rule by Akifumi Kuchiki

“…In this paper, we present the concept of “sequencing economics”, consisting of (A) segmentation, (B) construction sequencing, and (C) functions. An agglomeration is organized into segments, and sequencing economics examines the sequential process of efficiently building such segments. …”
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Aquila's Roads: Connecting Paphlagonian Spaces by Ching-yuan Wu

“…The paper concludes that Aquila’s road-building initiatives were instrumental in sustaining Amastris’s strategic significance and functionality within the Roman Empire. By examining the dynamic relationship between local and imperial priorities, this study offers insights into how infrastructure functioned as a nexus of governance, economic development, and regional integration in ancient Anatolia.…”
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Stream Nutrient Load and Concentration Estimation From Minimal Measurements by Wasif Bin Mamoon, Kun Zhang, Mitul Luhar, Anthony J. Parolari

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Multiplex CRISPR/Cas9 Editing of Rice Prolamin and GluA Glutelin Genes Reveals Subfamily-Specific Effects on Seed Protein Composition by María H. Guzmán-López, Susana Sánchez-León, Miriam Marín-Sanz, Francisco Barro

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History and prospects of flax genetic markers by Daiana A. Zhernova, Elena N. Pushkova, Tatiana A. Rozhmina, Elena V. Borkhert, Alexander A. Arkhipov, Alexander A. Arkhipov, Elizaveta A. Sigova, Elizaveta A. Sigova, Ekaterina M. Dvorianinova, Ekaterina M. Dvorianinova, Alexey A. Dmitriev, Alexey A. Dmitriev, Nataliya V. Melnikova

“…A major challenge remains the lack of knowledge on functional polymorphisms. To date, only a few are known, mainly mutations in the FAD3 genes responsible for reduced linolenic acid content in linseed oil. …”
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Holographic dual of crosscap conformal field theory by Zixia Wei

“…We compute the holographic ℝℙ2 partition function (or the p-function), one-point function, and 𝕂2 partition function, and see that they successfully reproduce the XCFT results. …”
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Electronic interaction and oxygen vacancy engineering of g-C3N4/α-Bi2O3 Z-scheme heterojunction for enhanced photocatalytic aerobic oxidative homo-/hetero-coupling of amines to imi... by Yanhua Gao, Tao Song, Xiuling Guo, Yan Zhang, Yong Yang

“…Amines with diverse functional groups were efficiently converted into the corresponding imines in good to excellent yields. …”
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Consturction and Optimination of Urban Ecological Space Network Based on MSPA Model and Ecological Protection Importance Evaluation by Wang Kun, Ma Chunxu, Zheng Yihan, Tian Xin, Hong Li, Liu Dan

“…[Conclusion] The application of the comprehensive MSPA analysis method and the ecological protection importance evaluation method in ecological network construction can help improve the structure and functionality of the ecological network.…”
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BertADP: a fine-tuned protein language model for anti-diabetic peptide prediction by Xueqin Xie, Changchun Wu, Yixuan Qi, Shanghua Liu, Jian Huang, Hao Lyu, Fuying Dao, Hao Lin

“…Anti-diabetic peptides (ADPs) have emerged as a research hotspot due to their therapeutic potential and natural safety, representing a promising class of functional peptides for diabetic management. However, conventional computational approaches for ADPs prediction mainly rely on manually extracted sequence features. …”
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