ClusterEmbed: Efficient Protein Structure Prediction with Clustering and Embeddings by Mu Bowei

“…To address this, we introduce ClusterEmbed, a novel, lightweight method for generating training data for protein structure prediction. ClusterEmbed combines rapid clustering-based MSA generation using MMSeqs2 with small-scale sequence sets and embedding extraction via pretrained protein language models, bypassing the need for extensive MSA datasets like those in OpenProteinSet. …”
Get full text

The effect of immune selection on the structure of the meningococcal opa protein repertoire. by Martin J Callaghan, Caroline O Buckee, Keith A Jolley, Paula Kriz, Martin C J Maiden, Sunetra Gupta

“…We analysed the Opa repertoire structure in a large, well-characterised collection of asymptomatically carried meningococci. …”
Get full text

Orbitrap noise structure and method for noise unbiased multivariate analysis by Michael R. Keenan, Gustavo F. Trindade, Alexander Pirkl, Clare L. Newell, Yuhong Jin, Konstantin Aizikov, Andreas Dannhorn, Junting Zhang, Lidija Matjačić, Henrik Arlinghaus, Anya Eyres, Rasmus Havelund, Richard J. A. Goodwin, Zoltan Takats, Josephine Bunch, Alex P. Gould, Alexander Makarov, Ian S. Gilmore

“…However, like all mass spectrometers, non-uniform (heteroscedastic) noise introduces bias in multivariate analysis complicating data interpretation. Here, we study the noise structure of an Orbitrap mass analyser integrated into a secondary ion mass spectrometer (OrbiSIMS). …”
Get full text

Structure and mineralization potential of the southwestern part of Sokoto Basin in Nigeria by U. Z. Magawata, U. Z. Magawata, N. K. Olasunkanmi, G. B. Egbeyale, A. Saleh

“…This study investigates the lithological boundaries, structural features, and mineralization potential in the southwestern part of the Sokoto Basin, Nigeria, using an integrated approach involving high-resolution aeromagnetic, radiometric, and Landsat 8 multispectral data. …”
Get full text

Plant cyanogenic glycosides: from structure to properties and potential applications by Beáta Piršelová, Jana Jakubčinová

“…In recent years, advanced analytical tools have greatly expanded our knowledge of CGs by enabling the identification of less abundant forms. Based on the latest data from published scientific studies, this review presents a comprehensive overview of CGs, with a focus on their structural variability, biosynthetic pathways, ecological functions, and inherent toxicity. …”
Get full text

Climate, predation, and the controls of island lizard abundance and community structure by Edita Folfas, D. Luke Mahler, Luke O. Frishkoff

Get full text

Quantum chemical research of the molecular structure of 3,4-dicyanofuroxan by I. N. Kolesnikova, N. V. Lobanov, V. N. Lobanov, I. F. Shishkov

“…The equilibrium molecular structure of 3,4-dicyanofuroxan was refined by means of quantum chemical calculations using the Gaussian09 program. …”
Get full text

Brain Structure Segmentation from MRI by Geometric Surface Flow by Greg Heckenberg, Yongjian Xi, Ye Duan, Jing Hua

“…We present a method for semiautomatic segmentation of brain structures such as thalamus from MRI images based on the concept of geometric surface flow. …”
Get full text

Tracking anharmonic oscillations in the structure of β-1,3-diacetylpyrene by A. Zwolenik, A. Makal

“…This example highlights that quantum crystallography tools can and should be applied in structural analysis even for data collected at high temperatures as well as of standard (∼0.8 Å) resolution.…”
Get full text

Phylogenetic diversity theory sheds light on the structure of microbial communities. by James P O'Dwyer, Steven W Kembel, Jessica L Green

“…Microbial communities are typically large, diverse, and complex, and identifying and understanding the processes driving their structure has implications ranging from ecosystem stability to human health and well-being. …”
Get full text

ANALYSIS OF POVERTY STRUCTURE IN INDONESIA USING A MULTIFACTORIAL APPROACH by Dewa Putu Yudi Pardita, I Gde Wedana Arjawa, Anak Agung Gde Krisna Paramita, I Made Setena

Get full text

The aspartate-less receiver (ALR) domains: distribution, structure and function. by Andrew F Maule, David P Wright, Joshua J Weiner, Lanlan Han, Francis C Peterson, Brian F Volkman, Nicholas R Silvaggi, Andrew T Ulijasz

“…Analysis of our informatics and the available ALR atomic structures, combined with structural, biochemical and genetic data of the ALR archetype RitR from Streptococcus pneumoniae presented here suggest that ALRs have reorganized their active pockets to instead take on a constitutive regulatory role or accommodate input signals other than Asp phosphorylation, while largely retaining the canonical post-phosphorylation mechanisms and dimeric interface. …”
Get full text

Structure of the mantle and tectonic zoning of the central Alpine-Himalayan belt by V. G. Trifonov, S. Yu. Sokolov

“…Using the 3D seismic tomography model, we compiled the sections showing the deviations of seismic P-wave velocities from the average values in the mantle, and analyzed the sections in comparison with the data on the crustal inhomogeneities expressed in geological structures. …”
Get full text

Statistics on the Industry Structure of the Russian Economy and its Optimization Model by O. V. Morozov, M. A. Vasiliev

“…This article describes the results of econometric research and optimization of the industry structure of the Russian economy. The results of modern domestic research on this topic show that the task of establishing theoretically justified quantitative criteria for optimizing the structural composition of multicomponent (discrete) social systems remains beyond due attention and not only should, but can be solved. …”
Get full text

Effect of Precision Nitrogen Fertilization of Grassland on Soil Microbial Structure by Anna Miernik, Jerzy Korończok

Get full text

An Improved Stochastic Configuration Networks With Compact Structure and Parameter Adaptation by Sanyi Li, Hongyu Guan, Peng Liu, Weichao Yue, Qian Wang

Get full text

No genetic structure detected in multiple Brazilian marine fish species by Julia Tovar Verba, Adam Stow, Priscila F. M. Lopes, Maria Grazia Pennino, Antonio Sole-Cava, Sergio Maia Queiroz Lima

“…Despite extensive environmental heterogeneity, we did not observe evidence of concordant patterns of genetic structure for those species along the Brazilian coast. …”
Get full text

Minimal metabolic pathway structure is consistent with associated biomolecular interactions by Aarash Bordbar, Harish Nagarajan, Nathan E Lewis, Haythem Latif, Ali Ebrahim, Stephen Federowicz, Jan Schellenberger, Bernhard O Palsson

“…Even though advances in high‐throughput data generation have transformed biology, the core of our biological understanding, and hence data interpretation, is still predicated on human‐defined pathways. …”
Get full text

Predicting the structure and stability of oxide nanoscrolls from dichalcogenide precursors by Adway Gupta, Arunima K. Singh

“…We validate this model using experimental observations and find excellent agreement for the equilibrium nanoscroll structure. Furthermore, we demonstrate that the model’s energies can be utilized for a generalized quantitative categorization of nanoscroll stability. …”
Get full text

Economic Structure and Problems of Trout Enterprises: A Case of Fethiye by Hicran Ekmekci, Mevlüt Gül

“…In this study, economic structure and problems of trout enterprise were analysed in Fethiye district. …”
Get full text