Performance of the Illumina GGP Bovine 100K SNP array for buffalo populations genotyping in Colombia by William Burgos-Paz, Yolanda Gómez-Vargas, Edison J. Ramírez-Toro

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Genome-Wide Expression of MicroRNAs Is Regulated by DNA Methylation in Hepatocarcinogenesis by Jing Shen, Shuang Wang, Abby B. Siegel, Helen Remotti, Qiao Wang, Iryna Sirosh, Regina M. Santella

“…Previous studies, including ours, have examined the regulation of microRNAs (miRNAs) by DNA methylation, but whether this regulation occurs at a genome-wide level in hepatocellular carcinoma (HCC) is unclear. …”
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Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice by Siyu Yang, Qingyi Cao, Zexin Wen, Aoxue Wang, Shiyao Shi, Zhuoying Liang, Shuying Li, Wenjun Gui, Jinwen Zhu

“…Until now, the reference genome of C. iria has not been published. Here, we completed the chromosome-level genome assembly of C. iria based on Illumina, PacBio and Hi-C reads. …”
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Genomic Alterations in Primary Gastric Adenocarcinomas Correlate with Clinicopathological Characteristics and Survival by Marjan M. Weiss, Ernst J. Kuipers, Cindy Postma, Antoine M. Snijders, Daniel Pinkel, Stefan G. M. Meuwissen, Donna Albertson, Gerrit A. Meijer

“…In order to investigate the patterns of chromosomal aberrations in gastric carcinomas, we performed genome‐wide microarray based comparative genomic hybridisation (microarray CGH). …”
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Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures by Clairet, Colin, Lapalu, Nicolas, Simon, Adeline, Soyer, Jessica L., Viaud, Muriel, Zehraoui, Enric, Dalmais, Berengère, Fudal, Isabelle, Ponts, Nadia

“…Control of fungal diseases on crops necessitates a global understanding of fungal pathogenicity determinants and their expression during infection. Genomes of phytopathogenic fungi are often compartmentalized: the core genome contains housekeeping genes whereas the fast-evolving genome mainly contains transposable elements and species-specific genes. …”
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From the Cytoplasm into the Nucleus—Hepatitis B Virus Travel and Genome Repair by Johan Ringlander, Gustaf E. Rydell, Michael Kann

“…Understanding the intracellular transport and genome repair mechanisms of HBV is crucial for developing new drugs, which—in combination with immune modulators—may contribute to potential cures. …”
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Genome-Wide Expression Difference of MicroRNAs in Basal Cell Carcinoma by Hai-Peng Wei, Song Zhan, Qing-An Zhu, Zhen-Juan Chen, Xian Feng, Jun-Yuan Chen, Qi-Lin Zhang, Jingjie Zhao, Lingzhang Meng

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3C-BASED METHODS FOR 3D GENOME ORGANIZATION ANALYSIS by N. R. Battulin, V. S. Fishman, Yu. L. Orlov, A. G. Menzorov, D. A. Afonnikov, O. L. Serov

Subjects: “…3d genome organization…”
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The complete mitochondrial genome of Ophiocordyceps gracilis and its comparison with related species by Aifeire Abuduaini, Yuan-Bing Wang, Hui-Ying Zhou, Rui-Ping Kang, Ming-Liang Ding, Yu Jiang, Fei-Ya Suo, Luo-Dong Huang

Subjects: “…Mitochondrial genome…”
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A phenomenological model of non-genomic variability of luminescent bacterial cells by S. I. Bartsev

Subjects: “…non-genomic variability…”
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Development and Validation of a Bordetella pertussis Whole-Genome Screening Strategy by Ricardo da Silva Antunes, Lorenzo G. Quiambao, Aaron Sutherland, Ferran Soldevila, Sandeep Kumar Dhanda, Sandra K. Armstrong, Timothy J. Brickman, Tod Merkel, Bjoern Peters, Alessandro Sette

“…Here, we compare the T cell reactivity of original aP and wP priming for different antigens contained or not contained in the aP vaccine and define the basis of a full-scale genomic map of memory T cell reactivity to BP antigens in humans. …”
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Corrigendum: In-depth analysis of IS6110 genomic variability in the Mycobacterium tuberculosis complex by Jessica Comín, Jessica Comín, Isabel Otal, Isabel Otal, Isabel Otal, Sofía Samper, Sofía Samper, Sofía Samper

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Draft genome sequence of Kei apple, an underutilized African tree crop by Robert Kariba, Bernice Waweru, Isaac Njaci, Linly Banda, Jenniffer W. Mwangi, Antso Harimanantsoa R, Samuel Muthemba, Jonathan Featherstone, Prasad Hendre, Ramni Jamnadass, Allen Van Deynze, Jean-Baka Domelevo Entfellner, Oluwaseyi Shorinola

“…We also annotated the genome and identified 27,449 protein-coding genes. …”
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Reversing the Negative Genomic Effects of Aging with Short-Term Calorie Restriction by Stephen R. Spindler

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Genome assembly of Hawaiian flower thrips Thrips hawaiiensis (Thysanoptera: Thripidae) by Xiaodi Hu, Houjun Tian, Yixin Chen, Yueqin Zheng, Hui Wei, Jian-Ping Chen, Chuan-Xi Zhang, Yong Chen, Yiyuan Li

“…Here, we sequenced the genome of T. hawaiiensis using Oxford Nanopore sequencing technology, Illumina, and Hi-C technology, yielding a genome assembly of 287.59 Mb with scaffold N50 of 13.84 Mb. …”
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Genomic scans for selection and runs of homozygosity in southern Italian turkey populations by Medhat S. Saleh, Vincenzo Landi, Martijn F.L. Derks, Gerardo Centoducati, Martien A.M. Groenen, Pasquale De Palo, Elena Ciani, Nicola Pugliese, Elena Circella, Antonio Camarda

Subjects: “…Whole genome analysis…”
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Genome sequence of Vibrio sp. OULL4 isolated from shellfish by Vengadesh Letchumanan, Wen-Si Tan, Wai-Fong Yin, Kok-Gan Chan

“…The availability of this genome sequence will facilitate the study of its antimicrobial traits, as well as add our knowledge of Vibrio sp. diversity and evolution. …”
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A chromosome-level genome assembly of the cabbage aphid Brevicoryne brassicae by Jun Wu, Guomeng Li, Zhimou Lin, Yangzhi Zhang, Wenyuan Yu, Rong Hu, Shuai Zhan, Yazhou Chen

“…The final assembled genome size was 429.99 Mb, with a scaffold N50 of 93.31 Mb. …”
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Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus) by Shufang Liu, Le Wang, Ruixiang Wang, Huan Wang, Ang Li, Changting An, Zining Meng, Zhimeng Zhuang

“…The genome sequence exhibited a remarkable degree of completeness, valued 94.07% of the complete BUSCO. …”
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Comparative Study of Genome Divergence in Salmonids with Various Rates of Genetic Isolation by Elena A. Shubina, Mikhail A. Nikitin, Ekaterina V. Ponomareva, Denis V. Goryunov, Oleg F. Gritsenko

“…International Journal of Genomics…”
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