Perspectives of Integrative Cancer Genomics in Next Generation Sequencing Era by So Mee Kwon, Hyunwoo Cho, Ji Hye Choi, Byul A Jee, Yuna Jo, Hyun Goo Woo

Subjects: “…cancer genomics…”
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REAL-TIME PCR OPTIMIZATION FOR LISTERIA MONOCYTOGENES GENOME DETECTION by G. S. Skitovich, N. B. Shadrova, O. V. Pruntova, K. V. Serova

“…That’s why the development of species-specific PCR techniques to detect L. monocytogenes genome is a topical task. L. monocytogenes bacteria genome detection technique using real-time polymerase chain reaction (qRT-PCR) was improved. …”
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The expanded genome of Hexamita inflata, a free-living diplomonad by Zeynep Akdeniz, Michal Havelka, Michal Stoklasa, Alejandro Jiménez-González, Vojtěch Žárský, Feifei Xu, Courtney W. Stairs, Jon Jerlström-Hultqvist, Martin Kolísko, Jan Provazník, Staffan Svärd, Jan O. Andersson, Jan Tachezy

“…The final version of the genome assembly is fragmented (1241 contigs) but substantially larger (142 Mbp) than the parasitic diplomonad genomes (9.8–14.7 Mbp). …”
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Optical genome mapping identified deletions, inversions, and insertions in hemophilia by Boyan Liu, Lu Zhou, Lijuan Cao, Haoning Liu, Laigen Tong, Zichan Zhang, Hongjie Shen, Changgeng Ruan, Yafeng Zhou, Miao Jiang

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Ülkemiz Lettuce Mosaic Virus İzolatının Tüm Genom Analizi by Savaş Korkmaz, Aysun Helvacı

“…Bu nedenle bu çalışma kapsamında ülkemiz orijinli bir LMV izolatının (LMV-CNK) tüm genom diziliminim ortaya çıkarılması hedeflenmiştir. …”
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In-depth Analysis of IS6110 Genomic Variability in the Mycobacterium tuberculosis Complex by Jessica Comín, Jessica Comín, Isabel Otal, Isabel Otal, Isabel Otal, Sofía Samper, Sofía Samper, Sofía Samper

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Understanding metastasis mixed-treatment responses through genomic analyses by Susana Garcia-Recio, Paola Zagami, Brooke M. Felsheim, Amy Wheless, Kerry Thomas, Renato Trimarchi, Lisa A. Carey, Charles M. Perou

“…Abstract Early-stage and metastatic breast cancers (MBC) can exhibit genomic heterogeneity, even within the same individual. …”
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Comparative Genomics Reveals Pathogenicity-Related Loci in Shewanella algae by Jui-Hsing Wang, Guo-Cheng He, Yao-Ting Huang, Po-Yu Liu

“…In this study, we aim to determine the occurrence of common virulence genes in S. algae using whole-genome sequence and comparative genomic analysis. …”
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Enhanced genome editing with a Streptococcus equinus Cas9 by Jingtong Liu, Yao Wang, Jingjing Wei, Shengzhou Wang, Miaomiao Li, Zheyong Huang, Sufang Zhang, Huihui Liu, Jinhai Huang, Yongming Wang

“…Abstract A large number of SpCas9 orthologs has been computationally identified, but their genome editing potential remains largely unknown. …”
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An Ontology-Based GIS for Genomic Data Management of Rumen Microbes by Saber Jelokhani-Niaraki, Mojtaba Tahmoorespur, Zarrin Minuchehr, Mohammad Reza Nassiri

“…Genomics & Informatics…”
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The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) by Nguyen Nhat Nam, Nguyen Ngoc Trai, Nguyen Phuong Thuy, Le Quoc Duy, Pham Nguyen Tuong Van, Tan Tai Nguyen, Hoang Dang Khoa Do

Subjects: “…comparative genomics…”
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Diversity and distribution of mobile genetic elements in marine invertebrates genomes by M. V. Puzakov, L. V. Puzakova, I. K. Zakharov

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Application of reproductive technologies to the improvement of dairy cattle genomic selection by N. S. Yudin, K. I. Lukyanov, M. I. Voevoda, N. A. Kolchanov

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Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra by Lan Lan, Haiyan Li, Shisong Xu, Yueting Xu, Qingyun Leng, Linbi Zhang, Linqiao Wu, Junmei Yin, Zhiqiang Wu, Junhai Niu

“…In this study, based on PacBio and Hi-C sequencing data, we presented the haplotype-resolved, and chromosome-level assembled genomes for B. glabra (2n = 34). We obtained two haplotypes with genome size of 2,855,692,602 bp and 2,889,511,499 bp, N50 of 165 Mbp and 167 Mbp, and both anchored to 17 chromosomes with anchor ratio of 97.07% and 97.55%, respectively. …”
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Nanopore-based random genomic sampling for intraoperative molecular diagnosis by Francesco E. Emiliani, Abdol Aziz Ould Ismail, Edward G. Hughes, Gregory J. Tsongalis, George J. Zanazzi, Chun-Chieh Lin

“…Genome Medicine…”
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Chromosome level genome assembly of ‘Wanfeng’ almond (Prunus dulcis) by Dongdong Zhang, Zhenfan Yu, Xingyue Liu, Yong Li, Bin Zeng, Lirong Wang

“…Abstract We assembled a chromosome-level genome of Chinese native ‘Wanfeng’ almond, with a size of 288.53 Mb and a contig N50 of 30.48 Mb. …”
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Whole genome sequencing in early onset advanced heart failure by Erik Linnér, Tomasz Czuba, Olof Gidlöf, Jakob Lundgren, Entela Bollano, Maria Hellberg, Selvi Celik, Neha Pimpalwar, Philipp Rentzsch, Molly Martorella, Anders Gummesson, Olle Melander, Sebastian Albinsson, Göran Dellgren, Jan Borén, Anders Jeppsson, R. Thomas Lumbers, Sonia Shah, Johan Nilsson, Pradeep Natarajan, Tuuli Lappalainen, Malin Levin, Hans Ehrencrona, J. Gustav Smith

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Comparative Analysis of Predicted Gene Expression among Crenarchaeal Genomes by Shibsankar Das, Brajadulal Chottopadhyay, Satyabrata Sahoo

“…Genomics & Informatics…”
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Genomic characterization of chronic lymphocytic leukemia in patients of African ancestry by Cecilia Bonolo de Campos, Chantal E. McCabe, Laura A. Bruins, Daniel R. O’Brien, Sochilt Brown, Renee C. Tschumper, Cristine Allmer, Yuan Xiao Zhu, Kari G. Rabe, Sameer A. Parikh, Neil E. Kay, Huihuang Yan, James R. Cerhan, John N. Allan, Richard R. Furman, J. Brice Weinberg, Danielle M. Brander, Diane F. Jelinek, Marta Chesi, Susan L. Slager, Esteban Braggio

“…In summary, these results suggest that genomic instability and NF-kB activation is more prevalent in AA CLL than EA CLL.…”
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Genomic Characterization of Radiation-Induced Intracranial Undifferentiated Pleomorphic Sarcoma by Christopher S. Hong, Edwin Partovi, James Clune, Anita Huttner, Henry S. Park, Sacit Bulent Omay

“…Further similar genomic studies of intracranial pleomorphic sarcoma are needed to develop better therapies for this rare but challenging disease entity.…”
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