Genomic insights into ecological adaptation of oaks revealed by phylogenomic analysis of multiple species by Tian-Rui Wang, Xin Ning, Si-Si Zheng, Yu Li, Zi-Jia Lu, Hong-Hu Meng, Bin-Jie Ge, Gregor Kozlowski, Meng-Xiao Yan, Yi-Gang Song

“…Quercus is a keystone genus in Northern Hemisphere forests, and its wide distribution in diverse ecosystems and long evolutionary history make it an ideal model for studying the genomic basis of ecological adaptations. Here we used a newly sequenced genome of Quercus gilva, an evergreen oak species from East Asia, with 18 published Fagales genomes to determine how Fagaceae genomes have evolved, identify genomic footprints of ecological adaptability in oaks in general, as well as between evergreen and deciduous oaks. …”
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Transcriptome Concordance Between Borderline Tumors and Endometrioid Carcinoma: An Integrative Genomic Analysis by Mio Takahashi, Kohei Nakamura, Tatsuyuki Chiyoda, Chihiro Okada, Sachio Nohara, Reika Takamatsu, Shintaro Yanazume, Hiroaki Kobayashi, Hiroshi Nishihara, Wataru Yamagami

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An Efficient Genome Fragment Assembling Using GA with Neighborhood Aware Fitness Function by Satoko Kikuchi, Goutam Chakraborty

“…To decode a long genome sequence, shotgun sequencing is the state-of-the-art technique. …”
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An investigation of machine learning methods applied to genomic prediction in yellow-feathered broilers by Bogong Liu, Huichao Liu, Junhao Tu, Jian Xiao, Jie Yang, Xi He, Haihan Zhang

Subjects: “…Genomic prediction…”
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Comparison of whole genome sequencing performance from fish swabs and fin clips by Annabell Macphee, Temitope Opeyemi Oriowo, Nils Sternberg, Madlen Stange

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Facile, High Quality Sequencing of Bacterial Genomes from Small Amounts of DNA by Momchilo Vuyisich, Ayesha Arefin, Karen Davenport, Shihai Feng, Cheryl Gleasner, Kim McMurry, Beverly Parson-Quintana, Jennifer Price, Matthew Scholz, Patrick Chain

“…International Journal of Genomics…”
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Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota) by Claudio G. Ametrano, Felix Grewe, Pedro W. Crous, Stephen B. Goodwin, Chen Liang, Laura Selbmann, H. Thorsten Lumbsch, Steven D. Leavitt, Lucia Muggia

“…We assembled phylogenomic datasets from newly sequenced (4) and previously available genomes (238) of 242 taxa. We explored the influence of tree inference methods, supermatrix vs. coalescent-based species tree, and the impact of varying amounts of genomic data. …”
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Dichotomous Effect of Caffeine, Curcumin, and Naringenin on Genomic DNA of Normal and Diabetic Subjects by Debarati Chattopadhyay, Ashok Somaiah, Divya Raghunathan, Kavitha Thirumurugan

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Molecular phylogeny and comparative chloroplast genome analysis of the type species Crucigenia quadrata by Ting Wang, Huan Feng, Huan Zhu, Bojian Zhong

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slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes by Petr, Martin, Haller, Benjamin C., Ralph, Peter L., Racimo, Fernando

“…To address this methodological gap, we present a new framework for simulating spatially-explicit genomic data, implemented in a new R package called slendr (www.slendr.net), which leverages a SLiM simulation back-end script bundled with the package. …”
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HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly by Md Mahfuzer Rahman, Ratul Sharker, Sajib Biswas, M. Sohel Rahman

“…International Journal of Genomics…”
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Population structure, selection signal and introgression of gamecocks revealed by whole genome sequencing by Naiyi Xu, Linyun Zhang, Feifan Chen, Zhengfu Feng, Jiangtao Zheng, DongHua Li, Yongju Zhao, Xiangtao Kang

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Epidemiological and Genome-Wide Association Study of Gastritis or Gastric Ulcer in Korean Populations by Sumin Oh, Sejong Oh

“…Genomics & Informatics…”
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Genome editing using CRISPR/ Cas9 system: a practical guide by A. G. Menzorov, V. A. Lukyanchikova, A. N. Korablev, I. A. Serova, V. S. Fishman

Subjects: “…genome editing…”
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PHOTOPROBER® Biotin: An Alternative Method for Labeling Archival DNA for Comparative Genomic Hybridization by Dirk Korinth, Konrad Donhuijsen, Ulrike Bockmühl, Iver Petersen

“…Comparative genomic hybridization (CGH) represents a powerful method for screening the entire genome of solid tumors for chromosomal imbalances. …”
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Optical genome mapping: Unraveling complex variations and enabling precise diagnosis in dystrophinopathy by Jiahui Mai, Jing Duan, Xiaoyu Chen, Liqin Liu, Dachao Liang, Tao Fu, Gang Lu, Wai Yee Chan, Xufeng Luo, Feiqiu Wen, Jianxiang Liao, Zhuo Li, Xinguo Lu

“…Abstract Objective Approximately 7% of individuals with dystrophinopathy remain undiagnosed at the genetic level using conventional genetic tests like multiplex ligation‐dependent probe amplification (MLPA) and next‐generation sequencing (NGS). We used the optical genome mapping (OGM) technology to detect and analyze uncommon mutations or structural variations (SVs) within the DMD gene, thus contributing to more precise clinical diagnoses. …”
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Genome biology of long non-coding RNAs in humans: A virtual karyotype by Alessandro Palma, Giulia Buonaiuto, Monica Ballarino, Pietro Laneve

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A novel lossless encoding algorithm for data compression–genomics data as an exemplar by Anas Al-okaily, Abdelghani Tbakhi

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Chromosome-level genome assembly of the sweet potato rot nematode Ditylenchus destructor by Yiwei Yang, Ruirui Feng, Bo Hong, Yuchuan Fang, Chen Liu, Kui Wang, Deliang Peng, Yingmei Li, Huan Peng, Qing Chang

“…This high-quality reference genome will serve as a valuable genomic resource for future research aimed at understanding the pathogenesis of D. destructor and developing effective control strategies.…”
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Genomic Diversity and Potential Transmission and Persistence of Salmonella in the Cambodian Vegetable Supply Chain by Abimel Salazar, Navin Sreng, Chanthol Peng, Yehzi Fu, Erin M. Nawrocki, Taejung Chung, Jessie Vipham, Edward G. Dudley, Jasna Kovac

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