Multimodal sequencing of neoadjuvant nivolumab treatment in hepatocellular carcinoma reveals cellular and molecular immune landscape for drug response by Fanhong Zeng, Qingyang Zhang, Yu-Man Tsui, Huanhuan Ma, Lu Tian, Abdullah Husain, Jingyi Lu, Joyce Man-Fong Lee, Vanilla Xin Zhang, Po-Man Li, Gary Cheuk-Hang Cheung, Tan-To Cheung, Daniel Wai-Hung Ho, Irene Oi-Lin Ng

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Cell type census in cerebral cortex reveals species-specific brain function and connectivity by Kohei Onishi, Tomomi Shimogori

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From Invaginating Site to Deep Lesion: Spatial Transcriptomics Unravels Ectopic Endometrial Penetration Features in Adenomyosis by Boyu Li, Jia Qi, Yumeng Cao, Yijing Long, Zhe Wei, Wang‐Sheng Wang, Shuanggang Hu, Yuan Wang, Qinling Zhu, Xiao Hu, Zhe Sun, Jie Zhu, Taiyang Ye, Yejie Yao, Yiwen Meng, Xuejiao Bian, Xinyi Dong, Hengyu Guan, Yunfei Huang, Yun Sun

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InSituCor: exploring spatially correlated genes conditional on the cell type landscape by Patrick Danaher, Dan McGuire, Lidan Wu, Michael Patrick, David Kroeppler, Haiyan Zhai, Deniz G. Olgun, Dennis Gong, Jingyi Cao, William L. Hwang, Joachim Schmid, Joseph M. Beechem

Subjects: “…Spatial transcriptomics…”
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A New Tool to Decrease Interobserver Variability in Biomarker Annotation in Solid Tumor Tissue for Spatial Transcriptomic Analysis by Sravya Palavalasa, Emily Baker, Jack Freeman, Aditri Gokul, Weihua Zhou, Dafydd Thomas, Wajd N. Al-Holou, Meredith A. Morgan, Theodore S. Lawrence, Daniel R. Wahl

Subjects: “…spatial transcriptomics…”
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Human placental extract improves liver cirrhosis in mice with regulation of macrophages and senescent cells by Natsuki Ishikawa, Yusuke Watanabe, Yuichirou Maeda, Tomoaki Yoshida, Naruhiro Kimura, Hiroyuki Abe, Akira Sakamaki, Hiroteru Kamimura, Takeshi Yokoo, Kenya Kamimura, Atsunori Tsuchiya, Shuji Terai

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Mapping the molecular signature of ABA-regulated gene expression in germinating barley embryos by Ewa Sybilska, Bahareh Sadat Haddadi, Luis A. J. Mur, Manfred Beckmann, Szymon Hryhorowicz, Joanna Suszynska-Zajczyk, Monika Knaur, Andrzej Pławski, Agata Daszkowska-Golec

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Interneuron transcriptomics reveals pathologic markers of Alzheimer's disease progression by Kevin S. Chen, Mohamed H. Noureldein, Diana M. Rigan, John M. Hayes, Kyle J. Loi, Junguk Hur, Masha G. Savelieff, Eva L. Feldman

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Integration of scRNA-seq and ST-seq identifies hyperproliferative RRM2+ cells features and therapeutic targets in gastric cancer by Shuai Ping, Xiong Jia, Yanan Tian

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Comparison of spatial transcriptomics technologies using tumor cryosections by Anne Rademacher, Alik Huseynov, Michele Bortolomeazzi, Sina Jasmin Wille, Sabrina Schumacher, Pooja Sant, Denise Keitel, Konstantin Okonechnikov, David R. Ghasemi, Kristian W. Pajtler, Jan-Philipp Mallm, Karsten Rippe

Subjects: “…Spatial transcriptomics…”
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PLOD3 as a novel oncogene in prognostic and immune infiltration risk model based on multi-machine learning in cervical cancer by Lingling Qiu, Xiuchai Qiu, Xiaoyi Yang

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Spatial Transcriptomics in Thyroid Cancer: Applications, Limitations, and Future Perspectives by Chaerim Song, Hye-Ji Park, Man S. Kim

Subjects: “…spatial transcriptomics…”
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Extraction of a stromal metastatic gene signature in breast cancer via spatial profiling by Giorgio Bertolazzi, Valeria Cancila, Davide Vacca, Beatrice Belmonte, Daniele Lecis, Parsa Sirati Moghaddam, Arianna Di Napoli, Mario Paolo Colombo, Giancarlo Pruneri, Giannino Del Sal, Giorgio Scita, Matteo Fassan, Andrea Vecchione, Silvio Bicciato, Claudio Tripodo

Subjects: “…Spatial transcriptomics…”
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MuCST: restoring and integrating heterogeneous morphology images and spatial transcriptomics data with contrastive learning by Yu Wang, Zaiyi Liu, Xiaoke Ma

Subjects: “…Spatial transcriptomics…”
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Spatial Transcriptomics Reveals Regional and Temporal Dynamics of Gene Expression in the Mouse Brain Across Development and Aging by Benjamin Conacher, Amanda Moore, Liduo Yin, Yu Lin, Xiguang Xu, Qinwen Mao, Hehuang Xie

Subjects: “…spatial transcriptomics…”
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SCNT: an R package for data analysis and visualization of single-cell and spatial transcriptomics by Jianbo Qing, Jialu Wu, Yafeng Li, Junnan Wu

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Taurine-mediated metabolic immune crosstalk indicates and promotes immunosuppression with anti-PD-1 resistance in bladder cancer by Zhengfang Liang, Fengwei Nong, Fengwei Nong, Zhenjie Li, Runmin Chen, Haoxu Zhao, Yongping Huang, Yongping Huang

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SMORE: spatial motifs reveal patterns in cellular architecture of complex tissues by Zainalabedin Samadi, Kai Hao, Amjad Askary

Subjects: “…Spatial transcriptomics…”
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Multidirectional therapeutic effects of synthesized HMGB1 peptide on liver cirrhosis in mice by Masaki Mito, Atsunori Tsuchiya, Soichi Ishii, Takafumi Tonouchi, Kaito Furuyama, Ryo Jinbo, Nobutaka Takeda, Hiroyuki Abe, Katsuto Tamai, Shuji Terai

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Investigation of the cytotoxic effects and mechanisms of the SLC39A6-targeting ADC drug BRY812 in CRC by Xianglin Liu, Wenqiang Liu, Yuting Wu, Yichuan Wang, Qingliang Jiang, Yangyang Li, Hengyu Li, Liqiang Hao

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