Unveiling migraine subtype heterogeneity and risk loci: integrated genome-wide association study and single-cell transcriptomics discovery by Shuxu Wei, Yan Quan, Xinyi Li, Suiqin Zhong, Ling Xiao, Chao Yang, Ronghuai Shen, Xiaojia Lu, Lingbin He, Youti Zhang, Xianxi Huang

Subjects: Get full text

Investigating the molecular mechanisms associated with ulcerative colitis through the application of single-cell combined spatial transcriptome sequencing by Hua Huang, Jiaze Ma, An Kang, Tianwei Guo, Wei Sun, Yan Xu, Lijiang Ji

Subjects: Get full text

Topic modeling analysis of the Allen Human Brain Atlas by Letizia Pizzini, Filippo Valle, Matteo Osella, Michele Caselle

Subjects: Get full text

Correction: Single-cell and spatial transcriptomics reveal a stress-induced EMT-like epithelial subset driving immune activation in silica-injured lung by Tao Wang, Tao Wang, Tao Wang, Jianfeng Hao, Bing Li, Bing Li, Ahjol Hyraht, Jialing Wang, Jialing Wang, Henglei Xia, Qingbin Wu, Wei Gao, Congxia Chen, Chuanqing Yu, Xiuqun Gong, Ting Li, Mei Zhang, Mei Zhang, Mei Zhang, Yinghai Xie, Xinrong Tao, Xinrong Tao, Xinrong Tao

Subjects: Get full text

Winnow-KAN: single-cell RNA-seq location recovery with small-gene-set spatial transcriptomics by Yuyang Zhang, Qihuang Zhang

Subjects: Get full text

Transcriptomic characterization of transitioning cell types in the skin of Atlantic salmon by R. Ruiz Daniels, S. J. Salisbury, L. Sveen, P. R. Villamayor, R. S. Taylor, M. Vaadal, T. Tengs, A. Krasnov, S. J. Monaghan, M. Ballantyne, C. Penaloza, M. D. Fast, J. E. Bron, R. Houston, N. Robinson, D Robledo

Subjects: Get full text

Single-cell and spatial transcriptomics reveal a stress-induced EMT-like epithelial subset driving immune activation in silica-injured lung by Tao Wang, Tao Wang, Tao Wang, Jianfeng Hao, Bing Li, Bing Li, Ahjol Hyraht, Jialing Wang, Jialing Wang, Henglei Xia, Qingbin Wu, Wei Gao, Congxia Chen, Chuanqing Yu, Xiuqun Gong, Ting Li, Mei Zhang, Mei Zhang, Mei Zhang, Yinghai Xie, Xinrong Tao, Xinrong Tao, Xinrong Tao

Subjects: Get full text

Single‐Cell and Spatial Transcriptomics Reveals a Stereoscopic Response of Rice Leaf Cells to Magnaporthe oryzae Infection by Wei Wang, Xianyu Zhang, Yong Zhang, Zhe Zhang, Chang Yang, Wen Cao, Yuqin Liang, Qinzheng Zhou, Qian Hu, Yimai Zhang, Yu Wang, Yingying Xing, Wenfeng Qian, Nan Yao, Ning Xu, Jun Liu

Subjects: Get full text

Integrated multi-omics analysis reveals the immunotherapeutic significance of tumor cells with high FN1 expression in ovarian cancer by Xinyi Zhang, Zhikai Xiahou, Fu Zhao, Qing Wu, Wei Nie, Shouyan Wang

Subjects: Get full text

Spatial transcriptomics uncovers immune-cell plasticity and dedifferentiation signatures in aggressive lung adenocarcinoma subtypes by Huiyan Deng, Qingyi Liu, Ziqiang Tian, Guangjie Liu, Shize Wang, Di Liang, Yun Wang, Yaqing Han, Shaonan Xie

Subjects: Get full text

An integrated approach for analyzing spatially resolved multi-omics datasets from the same tissue section by Thao Tran, Felicia Wee, Craig Ryan Joseph, Wanqiu Zhang, Jeffrey Chun Tatt Lim, Zhen Wei Neo, Li Yen Chong, Francis Hong Xin Yap, Nathan Heath Patterson, Marc Claesen, Alice Ly, Joe Yeong, Joe Yeong, Joe Yeong

Subjects: Get full text

Integrative single-cell and spatial transcriptomics uncover ELK4-mediated mechanisms in NDUFAB1+ tumor cells driving gastric cancer progression, metabolic reprogramming, and immune... by Yuwei Sun, Wenyang Nie, Zhikai Xiahou, Xiaojing Wang, Wenjia Liu, Zongkai Liu, Zhiheng Lin, Zhaidong Liu

Subjects: Get full text

A single cell atlas of the human liver tumor microenvironment by Hassan Massalha, Keren Bahar Halpern, Samir Abu‐Gazala, Tamar Jana, Efi E Massasa, Andreas E Moor, Lisa Buchauer, Milena Rozenberg, Eli Pikarsky, Ido Amit, Gideon Zamir, Shalev Itzkovitz

Subjects: Get full text

Spatial transcriptomics reveals unique metabolic profile and key oncogenic regulators of cervical squamous cell carcinoma by Limin Zhou, Jiejie Liu, Peipei Yao, Xing Liu, Fei Chen, Yu Chen, Li Zhou, Chao Shen, You Zhou, Xin Du, Junbo Hu

Subjects: Get full text

Integrated Single-Cell and Spatial Transcriptomic Analysis Identifies ISR-Related Genes Driving Immune Regulation in Parkinson’s Disease by Jiang H, Zhang X, Feng S, Feng W

Subjects: Get full text

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data by Diane Zhang, Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser, Jan Watter, Ofir Cohen, Orr Ashenberg, Daniel Abravanel, Judit Jané-Valbuena, Simon Mages, Ana Lako, Karla Helvie, Orit Rozenblatt-Rosen, Scott Rodig, Fei Chen, Nikhil Wagle, Aviv Regev, Johanna Klughammer

Subjects: “…Spatial transcriptomics…”
Get full text

Unveiling the crucial role of CD8+ T cell and endothelial cell interaction in rheumatoid arthritis through the integrated analysis of spatial transcriptomics and bulk/single-cell R... by Yu Lai, Zishao Zhong, Runze Li, Tuliang Liang, Xizi He, Yuan Liu, Hao Yu, Chuanhai Zhang, Yao Xiao, Liang Liu, Hudan Pan

Subjects: Get full text

Spatial transcriptome profiling identifies DTX3L and BST2 as key biomarkers in esophageal squamous cell carcinoma tumorigenesis by Rutao Li, Na Li, Qianqian Yang, Xing Tong, Wei Wang, Chang Li, Jun Zhao, Dong Jiang, Haitao Huang, Chen Fang, Kai Xie, Jiamin Yuan, Shaomu Chen, Guangbin Li, Haitao Luo, Zhibo Gao, Dongfang Wu, Xiaoli Cui, Wei Jiang, Lingchuan Guo, Haitao Ma, Yu Feng

Subjects: Get full text

The role of JPT1 in hepatocellular carcinoma: tumor progression, microtubule dynamics regulation, and potential mechanisms within the immune microenvironment by Yipin Lu, Peng Xu, Sha Li, Jie Yao

Subjects: Get full text

Editorial: Single-cell sequencing of the immune microenvironment in cancer by David G. Coffey

Subjects: Get full text