GeNetFormer: Transformer-Based Framework for Gene Expression Prediction in Breast Cancer by Oumeima Thaalbi, Moulay A. Akhloufi

Subjects: “…spatial transcriptomics…”
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Single-cell and spatial transcriptomic analyses revealing tumor microenvironment remodeling after neoadjuvant chemoimmunotherapy in non-small cell lung cancer by Xiaolu Cui, Siyuan Liu, He Song, Jingjing Xu, Yanbin Sun

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Epigenetic and Immune Profile Characteristics in Sinonasal Undifferentiated Carcinoma by Hyang Joo Ryu, Chung Lee, Sun Och Yoon

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Multi-omics approach reveals the impact of prognosis model-related genes on the tumor microenvironment in medulloblastoma by Dongming Han, Dongming Han, Xuan Chen, Xuan Chen, Xin Jin, Jiankang Li, Dongyang Wang, Dongyang Wang, Ziwei Wang

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Molecular pathology of acute spinal cord injury in middle-aged mice by Corey Fehlberg, Danny John, Brian Kang, James S. Choi, Susana Cerqueira, Alexis Brake, Jae K. Lee

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Spatial deciphering of the transcriptomic heterogeneity of tumor spread through air spaces in lung cancer by Wenhao Wang, Wenhao Zhou, Jingli Fan, Tao Jiang, Guang Yang, Congcong Song, Siwei Xu, Haitao Luo, Huining Liu

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Targeting immune cellular populations and transcription factors: unraveling the therapeutic potential of JQF for NAFLD by Lijuan Zhou, Jingyi Zhao, Kaile Ma, Rui Hao, Chensi Yao, Xiaowen Gou, Chuanxi Tian, Li Wan, Min Li, Xiaolin Tong

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Deciphering the tumor immune microenvironment: single-cell and spatial transcriptomic insights into cervical cancer fibroblasts by Zhiheng Lin, Youwei Zhou, Zhenran Liu, Wenyang Nie, Hengjie Cao, Shengnan Li, Xuanling Li, Lijun Zhu, Guangyao Lin, Yanyu Ding, Yi Jiang, Zuxi Gu, Lianwei Xu, Zhijie Zhao, Huabao Cai

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Spatiotemporal dynamic changes of meningeal microenvironment influence meningeal lymphatic function following subarachnoid hemorrhage: from inflammatory response to tissue remodeli... by Bingrui Zhu, Changming Liu, Ming Luo, Jiarui Chen, Sixuan Tian, Tiantong Zhan, Yibo Liu, Haocheng Zhang, Zhen Wang, Jianmin Zhang, Yuanjian Fang, Sheng Chen, Xiaoyu Wang

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Spatial transcriptomics in focal cortical dysplasia type IIb by Yujiao Wang, Yihe Wang, Linai Guo, Chunhao Shen, Yongjuan Fu, Penghu Wei, Yongzhi Shan, Qian Wu, Yue-Shan Piao, Guoguang Zhao

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Recent advances in biomarker detection of oral squamous cell carcinoma by Lan Liu, Xiaowu Zhong, Yue Zhong, Lihua Li

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Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma by Michael Heming, Svea Haessner, Jolien Wolbert, I-Na Lu, Xiaolin Li, Benjamin Brokinkel, Michael Müther, Markus Holling, Walter Stummer, Christian Thomas, Andreas Schulte-Mecklenbeck, Flavia de Faria, Marlon Stoeckius, Stephan Hailfinger, Georg Lenz, Kornelius Kerl, Heinz Wiendl, Gerd Meyer zu Hörste, Oliver M. Grauer

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SpaCCC: Large Language Model-Based Cell-Cell Communication Inference for Spatially Resolved Transcriptomic Data by Boya Ji, Xiaoqi Wang, Debin Qiao, Liwen Xu, Shaoliang Peng

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TM4SF1 overexpression in tumor-associated endothelial cells promotes microvascular invasion in hepatocellular carcinoma by Junwu Guo, Liangrui Chen, Binghua Dai, Chengjun Sui, Zhitao Dong, Keji Chen, Kecai Duan, Kunpeng Fang, Aijun Li, Kui Wang, Li Geng

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High CIB1 expression in colorectal cancer liver metastases correlates with worse survival and the replacement histopathological growth pattern by Shuang Fan, Johannes Robert Fleischer, Lolita Dokshokova, Lena Sophie Böhme, Gwendolyn Haas, Alexandra Maria Schmitt, Fabio Bennet Gätje, Linde-Allegra Emmalie Rosen, Hanibal Bohnenberger, Michael Ghadimi, Baolong Cui, Xingbo Xu, Joanna Maria Kalucka, Florian Bösch, Tiago De Oliveira, Lena-Christin Conradi

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Cancer stem cells and tumor-associated macrophages as mates in tumor progression: mechanisms of crosstalk and advanced bioinformatic tools to dissect their phenotypes and interacti... by Francesco Verona, Sebastiano Di Bella, Roberto Schirano, Camilla Manfredi, Francesca Angeloro, Giulia Bozzari, Matilde Todaro, Matilde Todaro, Giuseppe Giannini, Giuseppe Giannini, Giorgio Stassi, Veronica Veschi

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Spatial transcriptomics combined with single-nucleus RNA sequencing reveals glial cell heterogeneity in the human spinal cord by Yali Chen, Yiyong Wei, Jin Liu, Tao Zhu, Cheng Zhou, Donghang Zhang

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Inhibition of CDH11 Activates cGAS‐STING by Stimulating Branched Chain Amino Acid Catabolism and Mitigates Lung Metastasis of Adenoid Cystic Carcinoma by Rui‐Feng Li, Shuo Liu, Qian Gao, Min Fu, Xin‐Yi Sun, Mian Xiao, Xi‐Yuan Ge, Xin Peng

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Inflammatory factor CCL2 enhances the interaction between monocyte-macrophage cells and liver parenchymal cells to promote liver inflammation and fibrosis in biliary atresia by Xin Li, Shaowen Liu, Tengfei Li, Qianhui Yang, Yuqiang Chen, Yu Meng, Zhiru Wang, Yilin Zhao, Shujian Zhang, Liang Ge, Alimujiang Abudureyimu, Jianghua Zhan

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The integration of single-cell RNA sequencing and spatial transcriptomics reveals the tumor microenvironment and spatial organization of testicular diffuse large B-cell lymphomas by Xiaolong Wu, Jie Shi, Mujun Lu, Damin Yun, Sheng Gao, Longfei Hu, Fei Sun

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