Exploring the Latent Information in Spatial Transcriptomics Data via Multi‐View Graph Convolutional Network Based on Implicit Contrastive Learning by Sheng Ren, Xingyu Liao, Farong Liu, Jie Li, Xin Gao, Bin Yu

Subjects: “…spatial transcriptomics…”
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Gradient boosting reveals spatially diverse cholesterol gene signatures in colon cancer by Xiuxiu Yang, Debolina Chatterjee, Justin L. Couetil, Ziyu Liu, Valerie D. Ardon, Chao Chen, Jie Zhang, Kun Huang, Kun Huang, Kun Huang, Travis S. Johnson, Travis S. Johnson, Travis S. Johnson

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Single nuclear‐spatial transcriptomic sequencing reveals distinct puncture‐induced cell subpopulations in the intervertebral disc of a rat model by Guoyan Liang, Jing Tan, Chong Chen, Yuying Liu, Yongyu Ye, Xiaolin Pan, Qiujian Zheng, Yunbing Chang, Feng‐Juan Lyu

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Landscape analysis of m6A modification regulators reveals LRPPRC as a key modulator in tubule cells for DKD: a multi-omics study by Li Jiang, Hongda Yu, Jie Jian, Xulin Sai, Yudian Wang, Yufei Zhang, Xiai Wu

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Intercellular communication between FAP+ fibroblasts and SPP1+ macrophages in prostate cancer via multi-omics by Tingting Wu, Xinyu Li, Fei Zheng, Hanchao Liu, Yang Yu

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Spatial multi-omics analysis of tumor-stroma boundary cell features for predicting breast cancer progression and therapy response by Yuanyuan Wu, Youyang Shi, Zhanyang Luo, Xiqiu Zhou, Yonghao Chen, Xiaoyun Song, Sheng Liu

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Multi‐omics profiling identifies TNFRSF18 as a novel marker of exhausted CD8⁺ T cells and reveals tumour‐immune dynamics in colorectal cancer by Tengfei Jia, Yingxi Guo, Xin meng Cheng, Zeyang Zhou, Xiaojiang Xu, Hebin Liu, Xiaodong Yang

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Topology-aware pathway analysis of spatial transcriptomics by Siras Hakobyan, Maria Schmidt, Hans Binder, Arsen Arakelyan

Subjects: “…Spatial transcriptomics…”
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Single-Nucleus and Spatial Transcriptomics Revealing Host Response Differences Triggered by Mutated Virus in Severe Dengue by Qian Chen, Yizhen Yuan, Fangzhou Cai, Zhe Li, Qiang Wei, Wei Wang

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Novel Integration of Spatial and Single-Cell Omics Data Sets Enables Deeper Insights into IPF Pathogenesis by Fei Wang, Liang Jin, Xue Wang, Baoliang Cui, Yingli Yang, Lori Duggan, Annette Schwartz Sterman, Sarah M. Lloyd, Lisa A. Hazelwood, Neha Chaudhary, Bhupinder Bawa, Lucy A. Phillips, Yupeng He, Yu Tian

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Construction of a prostate adenocarcinoma molecular classification: integrating spatial transcriptomics with retrospective cohort validation by Bingnan Lu, Yifan Liu, Guo Ji, Yuntao Yao, Zhao Yang, Bolin Zhu, Lei Wang, Keqin Dong, Yuanan Li, Jiaying Shi, Junzhe He, Runzhi Huang, Wang Zhou, Xinming Cui, Xiuwu Pan, Xingang Cui

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Aging and head and neck cancer insights from single cell and spatial transcriptomic analyses by Yi Pei, Zhuying Mou, Lai Jiang, Jinyan Yang, Yuheng Gu, Jie Min, Lingyi Sunzhang, Nan Xiong, Xiang Xu, Hao Chi, Ke Xu, Sinian Liu, Huiyan Luo

Subjects: “…Spatial transcriptomics…”
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LETSmix: a spatially informed and learning-based domain adaptation method for cell-type deconvolution in spatial transcriptomics by Yangen Zhan, Yongbing Zhang, Zheqi Hu, Yifeng Wang, Zirui Zhu, Sijing Du, Xiangming Yan, Xiu Li

Subjects: “…Spatial transcriptomics…”
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MEA‐seqX: High‐Resolution Profiling of Large‐Scale Electrophysiological and Transcriptional Network Dynamics by Brett Addison Emery, Xin Hu, Diana Klütsch, Shahrukh Khanzada, Ludvig Larsson, Ionut Dumitru, Jonas Frisén, Joakim Lundeberg, Gerd Kempermann, Hayder Amin

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Single-cell transcriptomics reveals the heterogeneity and function of mast cells in human ccRCC by Xiyu Song, Xiyu Song, Xiyu Song, Jianhua Jiao, Jianhua Jiao, Jiayang Qin, Wei Zhang, Weijun Qin, Weijun Qin, Shuaijun Ma, Shuaijun Ma

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Mapping immunotherapy potential: spatial transcriptomics in the unraveling of tumor-immune microenvironments in head and neck squamous cell carcinoma by Seo-Won Choi, Jeong Heon Kim, Jisu Hong, Minsu Kwon

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Cross-tissue gene expression interactions from bulk, single cell and spatial transcriptomics with crossWGCNA by Aurora Savino, Raffaele M. Iannuzzi, Lidia Avalle, Andrea Lobascio, Francesco Iorio, Paolo Provero, Valeria Poli

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Dissecting the Spatial and Single‐Cell Transcriptomic Architecture of Cancer Stem Cell Niche Driving Tumor Progression in Gastric Cancer by Guangyu Zhang, Xin Zhang, Wenting Pan, Xizhao Chen, Lingfei Wan, Chunjie Liu, Yuting Yong, Yue Zhao, Shuli Sang, Lihua Zhang, Sheng Yao, Yushu Guo, Mingmei Wang, Xinhui Wang, Guangdun Peng, Xinlong Yan, Yanchun Wang, Min Zhang

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Joint cell segmentation and cell type annotation for spatial transcriptomics by Russell Littman, Zachary Hemminger, Robert Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman

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Spatial transcriptomics reveals prognostically LYZ + fibroblasts and colocalization with FN1 + macrophages in diffuse large B-cell lymphoma by Liyuan Dai, Ning Lou, Liling Huang, Lin Li, Le Tang, Yuankai Shi, Xiaohong Han

Subjects: “…Spatial transcriptomics…”
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