Spatial relationships and interactions of immune cell niches are linked to the pathologic response of muscle-invasive bladder cancer to neoadjuvant therapy by Wasilijiang Wahafu, Quan Zhou, Xihua Yang, Yongming Yang, Yuanyuan Zhao, Zhu Wang, Xiangpeng Kang, Xiongjun Ye, Nianzeng Xing

Subjects: Get full text

Spatial transcriptome analysis of myenteric plexus and intestinal epithelium of colon in patients with Parkinson’s disease by Chaewon Shin, Karoliina Eliisa Ruhno, Jung Hwan Shin, Sanha Hwang, Jasper Roldan Go, Minji Kang, Hyun Je Kim, Ji Hwan Moon, Han-Joon Kim

Subjects: Get full text

stGRL: spatial domain identification, denoising, and imputation algorithm for spatial transcriptome data based on multi-task graph contrastive representation learning by Xin Lu, Murong Zhou, Bo Gao, Fang Wang, Shuilin Jin, Qiaoming Liu, Guohua Wang

Subjects: “…Spatial transcriptomics…”
Get full text

mNSF: multi-sample non-negative spatial factorization by Yi Wang, Kyla Woyshner, Chaichontat Sriworarat, Genevieve Stein-O’Brien, Loyal A. Goff, Kasper D. Hansen

Subjects: “…Spatial transcriptomics…”
Get full text

CRP deposition in human abdominal aortic aneurysm is associated with transcriptome alterations toward aneurysmal pathogenesis: insights from in situ spatial whole transcriptomic an... by Eun Na Kim, Hee Young Seok, Joon Seo Lim, Jiwon Koh, Jeong Mo Bae, Chong Jai Kim, Ga-Hyeon Ryu, You Jung Ok, Jae-Sung Choi, Chung-Hyun Cho, Se Jin Oh

Subjects: Get full text

Ginsenoside Rb1 and berberine synergistically protect against type 2 diabetes mellitus via GDF15/HAMP pathway throughout the liver lobules: Insights from spatial transcriptomics an... by Rongfang Guo, Shuying Zhang, Anyao Li, Ping Zhang, Xin Peng, Xiaoyan Lu, Xiaohui Fan

Subjects: Get full text

Spatially resolved transcriptomic signatures of hippocampal subregions and Arc-expressing ensembles in active place avoidance memory by Isaac Vingan, Shwetha Phatarpekar, Victoria Sook Keng Tung, Alejandro Iván Hernández, Alejandro Iván Hernández, Alejandro Iván Hernández, Oleg V. Evgrafov, Oleg V. Evgrafov, Oleg V. Evgrafov, Oleg V. Evgrafov, Juan Marcos Alarcon, Juan Marcos Alarcon, Juan Marcos Alarcon

Subjects: “…spatial transcriptomics…”
Get full text

Spatial transcriptomics and scRNA-seq: decoding tumor complexity and constructing prognostic models in colorectal cancer by Wei Song, Yatao Wang, Min Zhou, Fengqin Guo, Yanliang Liu

Subjects: Get full text

Current status, hotspots and frontiers of ion channel-related research in glioblastoma: a bibliometric analysis from 2005 to 2024 by Zefeng He, Jing Liu, Qianxu Jin, Shangkun Ren, Liang Liu, Yingzi Liu

Subjects: Get full text

A Bayesian hierarchical model with spatially varying dispersion for reference-free cell type deconvolution in spatial transcriptomics by Xuan Li, Yincai Tang, Jingsi Ming, Xingjie Shi

Subjects: “…Spatial transcriptomics…”
Get full text

Spatially resolved gene expression profiles of fibrosing interstitial lung diseases by Seung J. Kim, Matthew J. Cecchini, Elissa Woo, Nathashi Jayawardena, Daniel T. Passos, Frederick A. Dick, Marco Mura

Subjects: Get full text

Extracellular vesicle-derived miRNA-mediated cell–cell communication inference for single-cell transcriptomic data with miRTalk by Xin Shao, Lingqi Yu, Chengyu Li, Jingyang Qian, Xinyu Yang, Haihong Yang, Jie Liao, Xueru Fan, Xiao Xu, Xiaohui Fan

Subjects: Get full text

Telmisartan modulates exercise responses in peripheral artery disease: Analyses of skeletal muscle from the TELEX Trial by Kate Kosmac, PhD, Jai K. Joshi, BS, Mary M. McDermott, MD, Jada C. Stewart, BS, Dongxue Zhang, MS, Shujun Xu, MS, Karen J. Ho, MD, Robert Sufit, MD, Luigi Ferrucci, MD, Charlotte A. Peterson, PhD, Ahmed Ismaeel, PhD

Subjects: Get full text

Multiscale Dissection of Spatial Heterogeneity by Integrating Multi‐Slice Spatial and Single‐Cell Transcriptomics by Yuqi Chen, Caiwei Zhen, Yuanyuan Mo, Juan Liu, Lihua Zhang

Subjects: Get full text

Novel insights into kidney disease: the scRNA-seq and spatial transcriptomics approaches: a literature review by Mingming Ma, Qiao Luo, Liangmei Chen, Fanna Liu, Lianghong Yin, Baozhang Guan

Subjects: Get full text

Application of Spatial Transcriptomics in Digestive System Tumors by Bowen Huang, Yingjia Chen, Shuqiang Yuan

Subjects: “…spatial transcriptomics…”
Get full text

Spatial transcriptomic analysis of 4NQO-induced tongue cancer revealed cellular lineage diversity and evolutionary trajectory by Feng Liu, Feng Liu, Xiaojun Wu, Shaoqing Yu, Deqiang Cheng, Jun Pan, Xiaodong Wang, Guanzhen Yu, Guanzhen Yu, Chaofu Li

Subjects: “…spatial transcriptomics…”
Get full text

stGuide advances label transfer in spatial transcriptomics through attention-based supervised graph representation learning by Yupeng Xu, Hao Dai, Jinwang Feng, Keren Xu, Qiu Wang, Pingting Gao, Chunman Zuo, Chunman Zuo

Subjects: “…spatial transcriptomics…”
Get full text

Single-cell and spatial transcriptome profiling reveal CTHRC1+ fibroblasts promote EMT through WNT5A signaling in colorectal cancer by Yunfei Lu, Yang Chen, Zhenling Wang, Hengyang Shen, Lei Xu, Changzhi Huang, Ying Tong, Yu Shao, Hongqiang Zhang, Zan Fu

Subjects: Get full text

Heterogenous cancer-associated fibroblasts related tumor microenvironment marked by CD10/KLF4/TIAM1 were identified in pancreatic adenocarcinoma by integrated transcriptomics by Yu Wan, Yu Wan, Yu Wan, Qiong Hu, Kai Sun, Jing Shi, Limei Liu, Xiangsong Zhang, Jianjun Huang, Chulan Gong, Jinting Liu, Haijiu Wang, Jun Yan, Jun Yan

Subjects: Get full text