DeepGFT: identifying spatial domains in spatial transcriptomics of complex and 3D tissue using deep learning and graph Fourier transform by Shuli Sun, Jixin Liu, Guojun Li, Bingqiang Liu

Subjects: “…Spatial resolved transcriptomics…”
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stDyer enables spatial domain clustering with dynamic graph embedding by Ke Xu, Yu Xu, Zirui Wang, Xin Maizie Zhou, Lu Zhang

Subjects: “…Spatially resolved transcriptomics…”
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STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes by Ran Wang, Yan Qian, Xiaojing Guo, Fangda Song, Zhiqiang Xiong, Shirong Cai, Xiuwu Bian, Man Hon Wong, Qin Cao, Lixin Cheng, Gang Lu, Kwong Sak Leung

Subjects: “…Spatially resolved transcriptomics…”
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Spatial and Single‐Cell Transcriptomics Unraveled Spatial Evolution of Papillary Thyroid Cancer by Guangzhe Zheng, Shaobo Chen, Wanqi Ma, Quanshu Wang, Li Sun, Changwen Zhang, Ge Chen, Shuping Zhang, Shuguang Chen

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STopover captures spatial colocalization and interaction in the tumor microenvironment using topological analysis in spatial transcriptomics data by Sungwoo Bae, Hyekyoung Lee, Kwon Joong Na, Dong Soo Lee, Hongyoon Choi, Young Tae Kim

Subjects: “…Spatially resolved transcriptomics…”
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The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue by Angelica Johansson, Eirini Kalliara, Emma Belfrage, Teodor Alling, Paul Theodor Pyl, Anna Sandström Gerdtsson, Urban Gullberg, Anna Porwit, Kristina Drott, Sara Ek

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SpaSEG: unsupervised deep learning for multi-task analysis of spatially resolved transcriptomics by Yong Bai, Xiangyu Guo, Keyin Liu, Bingjie Zheng, Yilin Wei, Yingyue Wang, Wenxi Zhang, Qiuhong Luo, Jianhua Yin, Liang Wu, Yuxiang Li, Yong Zhang, Ao Chen, Xiangdong Wang, Xun Xu, Chuanyu Liu, Xin Jin

Subjects: “…Spatially resolved transcriptomics…”
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