Combining handcrafted and learned features using deep learning to improve protein-protein interaction prediction performance by Tran Hoai Nhan, Nguyen Phuc Xuan Quynh, Le Anh Phuong

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Motif-guided identification of KRAS-interacting proteins by Sanan Wu, Xiaoyang Gao, Di Wu, Lu Liu, Han Yao, Xiangjun Meng, Xianglei Zhang, Fang Bai

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Deciphering the alteration of MAP2 interactome caused by a schizophrenia-associated phosphorylation by Jiali Lyu, Matthew L MacDonald, Shelby Ruiz, Shinnyi Chou, Jordan Gilardi, Serena C Buchwald, Melanie J Grubisha, Robert A Sweet

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Zika virus infection in a non-neural cell host promotes differential expression of proteins associated with neurological conditions by JÚLIA F. SANT’ANA, EMANUELA FERNANDA TURETA, RAFAEL L. DA ROSA, YOHANA P. CALEGARI-ALVES, ALINE M. FAUSTINO, ANA LUIZA MARQUES, LARISSA DANIELE BOBERMIN, ANDRÉ QUINCOZES-SANTOS, ANA PAULA M. VARELA, PATRÍCIA SESTERHEIM, MARKUS BERGER, RAMON D. PEÑA, DIOGO O. SOUZA, PAULO ROEHE, JORGE A. GUIMARÃES, ALEXANDRE R. CAMPOS, LUCÉLIA SANTI, WALTER ORLANDO BEYS-DA-SILVA

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The Neurospora photoreceptor VIVID exerts negative and positive control on light sensing to achieve adaptation by Elan Gin, Axel C R Diernfellner, Michael Brunner, Thomas Höfer

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Sensitivity analysis on protein-protein interaction networks through deep graph networks by Alessandro Dipalma, Michele Fontanesi, Alessio Micheli, Paolo Milazzo, Marco Podda

Subjects: “…Protein-protein interaction…”
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Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases by András Zeke, Tomas Bastys, Anita Alexa, Ágnes Garai, Bálint Mészáros, Klára Kirsch, Zsuzsanna Dosztányi, Olga V Kalinina, Attila Reményi

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Network pharmacology-based screening and validation of tea-derived small molecules against lung cancer by YANG Rui, DU Sifen, JIANG Lehui, FU Tian, REN Pengju, JIANG Chengyu, ZHANG Yanli

Subjects: “…tea|lung cancer|network pharmacology|protein-protein interaction network…”
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Discovery and SAR analysis of phenylbenzo[d][1,3]dioxole-based proprotein convertase subtilisin/kexin type 9 inhibitors by Fahui Li, Lihui Zhang, Jinhong Feng, Lei Zhang

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Proteomic analyses reveal distinct chromatin‐associated and soluble transcription factor complexes by Xu Li, Wenqi Wang, Jiadong Wang, Anna Malovannaya, Yuanxin Xi, Wei Li, Rudy Guerra, David H Hawke, Jun Qin, Junjie Chen

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Exogenous interactome analysis of bovine viral diarrhea virus-host using network based-approach and identification of hub genes and important pathways involved in virus pathogenesi... by Seyedeh Elham Rezatofighi

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Comparative transcriptomic analysis of the malaria parasites Plasmodium falciparum and Plasmodium vivax sensitive and resistant strains by S. Sakpal, S. Z. Abdeen, Sh. L. Kothari, V. Bastikar

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A novel module of MaMADS31-MaBZR2 confers negative regulation of banana fruit ripening by Chaojie Wu, Wei Wei, Danling Cai, Zengxiang Lin, Yingying Yang, Jia Si, Wei Shan, Jianye Chen, Wangjin Lu, Jianfei Kuang

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Isolation and molecular characterization of a phytoplasma-induced cDNA clone encoding a lipoamide dehydrogenase from Sesamum alatum implicated in disease resistance by K. N. Singh, Ajit Tiwari, Deepti Srivastava, Mahesh Kumar, Devanshu Dev, Parveen Fatima, Sudha Nandni, Kahkashan Arzoo, Md. Shamim

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Inhibiting MARCH5/Mfn2 signaling as an alternative strategy to protect cardiomyocytes from hypoxia-induced mitochondrial dysfunction by Faten Habrat Zoabi, Mulate Zerihun, Roy Lizarovich, Chiara Dalla Torre, Liron Davis, Offir Ertracht, Michal Barsheshet, Shaul Atar, Deborah E. Shalev, Marta De Zotti, Hanoch Senderowitz, Nir Qvit

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Identification of SepF in Streptococcus suis involving cell division by Ting Gao, Tingting Li, Jiajia Zhu, Linlin Zheng, Mo Chen, Wei Liu, Keli Yang, Tengfei Zhang, Fangyan Yuan, Zewen Liu, Rui Guo, Chang Li, Qiong Wu, Yongxiang Tian, Rui Zhou, Danna Zhou

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Feature fusion with attributed deepwalk for protein–protein interaction prediction by Mei-Yuan Cao, Suhaila Zainudin, Kauthar Mohd Daud

Subjects: “…Protein–protein interaction…”
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Editorial: Understanding the mechanism of dynamic cell communications: a much needed angle for cell motility and barrier functions by Virag Vas, Zhen Xu, Pasquale Cervero

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Exploring the neuroprotective mechanisms of Jiawei Suanzaoren decoction in depression: insights from network pharmacology and molecular docking by Ruiting Ma, Wenjing Zhang, Lixia Chen, Lijun Tong

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Investigation of Critical Genes and Quantitative Trait Loci Related to Economic Traits in Broiler Chicken Genome Using Protein-Protein Interaction Network by Sadegh Taheri, Saeed Zerehdaran, Ali Javadmanesh

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