Response to: Comment on “Analysis of Microarray-Identified Genes and MicroRNAs Associated with Idiopathic Pulmonary Fibrosis” by Lichao Fan, Xiaoting Yu, Ziling Huang, Shaoqiang Zheng, Yongxin Zhou, Hanjing Lv, Yu Zeng, Jin-Fu Xu, Xuyou Zhu, Xianghua Yi

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Comparison of machine-learning methodologies for accurate diagnosis of sepsis using microarray gene expression data. by Dominik Schaack, Markus A Weigand, Florian Uhle

“…We investigate the feasibility of molecular-level sample classification of sepsis using microarray gene expression data merged by in silico meta-analysis. …”
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P809: Prenatal chromosomal microarray classification and reporting among screen positive cases in California by Sona Saha, Bret Hutchinson, John Williams, Rhona Schreck

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Microarray Gene Expression Analysis of Murine Tumor Heterogeneity Defined by Dynamic Contrast-Enhanced MRI by Nick G. Costouros, Dominique Lorang, Yantian Zhang, Marshall S. Miller, Felix E. Diehn, Stephen M. Hewitt, Michael V. Knopp, King C. P. Li, Peter L. Choyke, H. Richard Alexander, Steven K. Libutti

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Microarray approach for cloned library quality assessment and the comprehensive identification of positives from library screens by Ronald K. Blackman, Benjamin S. Amidon

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Immunogenicity, safety, usability and acceptability of microarray patches for vaccination: a systematic review and meta-analysis by S Rachel Skinner, Robert Booy, Erin Mathieu, Claire Thomas, Matthew N Berger, Ellen S Mowbray, Marian W A Farag, Cristyn Davies, Angus H Forster

“…Background Microarray patches (MAPs) deliver vaccines to the epidermis and the upper dermis, where abundant immune cells reside. …”
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Cytokeratin Profiles Identify Diagnostic Signatures in Colorectal Cancer Using Multiplex Analysis of Tissue Microarrays by Thomas Knösel, Valeska Emde, Karsten Schlüns, Peter Michael Schlag, Manfred Dietel, Iver Petersen

“…Our objectives in this study were (1) to test whether cytokeratins were also distinct on the protein level, (2) to evaluate these biomarkers in a series of well-characterised CRCs, (3) to apply hierarchical cluster analysis to immunohistochemical data. Methods: Tissue microarrays (TMA) comprising 468 CRC specimens from 203 patients were constructed to evaluate CK5, CK7, CK8, CK13, CK14, CK16, CK17, CK18, CK19 and CK20. …”
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SNP Microarray in FISH Negative Clinically Suspected 22q11.2 Microdeletion Syndrome by Ashutosh Halder, Manish Jain, Amanpreet Kaur Kalsi

“…The present study evaluated the role of SNP microarray in 101 cases of clinically suspected FISH negative (noninformative/normal) 22q11.2 microdeletion syndrome. …”
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16: Cross-comparison of optical genome mapping and chromosomal microarray data using VIA software by James Yu, Jen Hauenstein, Gunter Scharer, Ulrich Broeckel, Alex Hastie, Alka Chaubey

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USE OF cDNA MICROARRAY TECHNOLOGY FOR IDENTIFICATION OF NOVEL GENES RESPONDING TO ABSCISIC ACID PHYTOHORMONE by D. Cabezas, Sandra Pérez, R. Huelva, Dong Haitao, Li Debao

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Effects of oxidized phospholipids on gene expression in RAW 264.7 macrophages: a microarray study. by Daniel Koller, Hubert Hackl, Juliane Gertrude Bogner-Strauß, Albin Hermetter

“…In this study we present the effects of 1-palmitoyl-2-glutaroyl-sn-glycero-3-phosphocholine (PGPC) and 1-palmitoyl-2-(5-oxovaleroyl)-sn-glycero-3-phosphocholine (POVPC) on gene expression in RAW 264.7 macrophages using cDNA microarrays. PGPC affected the regulation of 146 genes, whereas POVPC showed only very minor effects. …”
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Circular RNA microarray expression profile and potential function of circDOCK1 in colorectal cancer by Guojing Zhang, Xiaoyan Wu, Hongmin Fu, Daqing Sun

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Distinct antibody responses of patients with mild and severe leptospirosis determined by whole proteome microarray analysis. by Carolina Lessa-Aquino, Janet C Lindow, Arlo Randall, Elsio Wunder, Jozelyn Pablo, Rie Nakajima, Algis Jasinskas, Jaqueline S Cruz, Alcineia O Damião, Nívison Nery, Guilherme S Ribeiro, Federico Costa, José E Hagan, Mitermayer Galvão Reis, Albert I Ko, Marco Alberto Medeiros, Philip L Felgner

“…<h4>Methods and principal findings</h4>Here, we used protein microarray chip to profile the antibody responses of patients with severe and mild leptospirosis against the complete Leptospira interrogans serovar Copenhageni predicted ORFeome. …”
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Molecular sub-classification of renal epithelial tumors using meta-analysis of gene expression microarrays. by Thomas Sanford, Paul H Chung, Ariel Reinish, Vladimir Valera, Ramaprasad Srinivasan, W Marston Linehan, Gennady Bratslavsky

“…<h4>Experimental design</h4>A search of publicly available databases was performed to identify microarray datasets with multiple histologic sub-types of renal cortical neoplasms. …”
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Application of chromosome microarray analysis in patients with unexplained developmental delay/intellectual disability in South China by Rongyue Wang, Tingying Lei, Fang Fu, Ru Li, Xiangyi Jing, Xin Yang, Juan Liu, Dongzhi Li, Can Liao

“…Background and methods: Chromosome microarray analysis (CMA) is currently the first-tier diagnostic assay for the evaluation of developmental delay (DD) and intellectual disability (ID) with unknown etiology. …”
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Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics. by L Safak Yilmaz, Alexander Loy, Erik S Wright, Michael Wagner, Daniel R Noguera

“…A linear free energy model (LFEM) was developed and microarray-specific nearest neighbor rules were derived. …”
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P854: Case report: Incidental diagnosis of Mulchandani-Bhoj-Conlin syndrome by prenatal microarray by Lauren Petrarca

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Data analysis of high-throughput sequencing and microarray to identify key signatures of microribonucleic acids in glioblastoma by A. A. Pushkin, E. A. Dzenkova, N. N. Timoshkina, D. Yu. Gvaldin

“…A total of 156 glioblastoma samples with mRNA sequencing data, 571 samples with microarray microRNA analysis data, and 15 control samples were analyzed. …”
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Machine learning identification of molecular targets for medulloblastoma subgroups using microarray gene fingerprint analysis by Alicia Reveles-Espinoza, Ulises Villela, Edgar Hernandez-Martinez, Isaac Chairez, Sergio Juárez-Méndez, J. Casanova-Moreno, Ma. del Pilar Eguía-Aguilar, Luis Figueroa-Yáñez, Adriana Vallejo-Cardona, Iván Salgado

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Genotyping of Staphylococcus aureus associated with nasal colonization among healthcare workers using DNA microarray by Abiola Catherine Senok, Ali Somily, Muhabat Raji, Ghada Garaween, Maha Kabil, Atef Shibl, Stefan Monecke, Ralf Ehricht

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