Specificities of multi-primer polymerase chain reaction optimization for the detection of infectious pneumonia agents in human by E. S. Klochikhina, V. E. Shershov, V. E. Kuznetsova, S. A. Lapa, A. V. Chudinov

“…A prototype of a system for pathogenic agent detection in the immobilized phase (biological microarray) was created.…”
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KSHV MicroRNAs Repress Tropomyosin 1 and Increase Anchorage-Independent Growth and Endothelial Tube Formation. by Philippe Kieffer-Kwon, Christine Happel, Thomas S Uldrick, Dhivya Ramalingam, Joseph M Ziegelbauer

“…In KS tumors, KSHV expresses only a few latent proteins together with 12 pre-microRNAs. Previous microarray and proteomic studies predicted that multiple splice variants of the tumor suppressor protein tropomyosin 1 (TPM1) were targets of KSHV microRNAs. …”
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Current Challenges in Development of Differentially Expressed and Prognostic Prostate Cancer Biomarkers by Steven M. Lucas, Elisabeth I. Heath

“…In this paper we review the differential expression of genes and microRNAs identified through microarray analysis as potentially useful markers for prostate cancer prognosis and discuss some of the challenges associated with their development. …”
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A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis. by Joshua M Baughman, Roland Nilsson, Vishal M Gohil, Daniel H Arlow, Zareen Gauhar, Vamsi K Mootha

“…We developed a computational procedure, which we call expression screening, which integrates information from thousands of microarray data sets in a principled manner to identify genes that are consistently co-expressed with a target pathway across biological contexts. …”
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Modeling the Drosophila gene cluster regulation network for muscle development. by Alexandre Haye, Jaroslav Albert, Marianne Rooman

“…We focused on data from DNA microarray time series for 20 Drosophila genes involved in muscle development during the embryonic stage. …”
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Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm. by Robert Darkins, Emma J Cooke, Zoubin Ghahramani, Paul D W Kirk, David L Wild, Richard S Savage

“…In this paper we focus on a particular application to microarray gene expression data. We define and analyse the randomised algorithm, before presenting results on both synthetic and real biological data sets. …”
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In silico analyses and global transcriptional profiling reveal novel putative targets for Pea3 transcription factor related to its function in neurons. by Başak Kandemir, Ugur Dag, Burcu Bakir Gungor, İlknur Melis Durasi, Burcu Erdogan, Eray Sahin, Ugur Sezerman, Isil Aksan Kurnaz

“…Present study particularly focuses on the identification of novel neuronal targets of Pea3 in a combinatorial approach, through curation, computational analysis and microarray studies in a neuronal model system, SH-SY5Y neuroblastoma cells. …”
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Emerging Putative Biomarkers: The Role of Alpha 2 and 6 Integrins in Susceptibility, Treatment, and Prognosis by James R. Marthick, Joanne L. Dickinson

“…Genome-wide association studies (GWASs) and microarray gene expression studies have identified genetic associations with prostate cancer susceptibility and tumour development. …”
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Probing the microRNA landscape in cadmium chloride induced renal toxicity through an in silico approach by Arnab Mukherjee, Sai Eashan Vankamamidi, Mukunthan KS

“…These non-coding RNAs regulate gene expression by promoting mRNA degradation and translational repression. In this study, microarray data from HK-2 cells exposed to CdCl₂ was analyzed, revealing increased oxidative stress and disrupted mitochondrial function. …”
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Comprehensive computational analysis reveals H5N1 influenza virus-encoded miRNAs and host-specific targets associated with antiviral immune responses and protein binding. by Fatima Noor, Muhammad Hamzah Saleem, Muhammad Rizwan Javed, Jen-Tsung Chen, Usman Ali Ashfaq, Mohammad K Okla, Mostafa A Abdel-Maksoud, Yasmeen A Alwasel, Wahidah H Al-Qahtani, Huda Alshaya, Ghulam Yasin, Sidra Aslam

“…Functional enrichment analysis of targeted genes revealed their involvement in many biological pathways that facilitate their host pathogenesis. Eventually, the microarray dataset (GSE28166) was analyzed to validate the altered expression level of target genes and found the genes involved in protein binding and adaptive immune responses. …”
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Targeted transcriptomic study of the implication of central metabolic pathways in mannosylerythritol lipids biosynthesis in Pseudozyma antarctica T-34. by Keisuke Wada, Hideaki Koike, Tatsuya Fujii, Tomotake Morita

“…In the present study, we used previous gene expression profiles measured by DNA microarray analyses after culturing on two carbon sources, glucose and soybean oil, to further characterize MEL biosynthesis in P. antarctica T-34. …”
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Dissociation of mitochondrial and ribosomal biogenesis during thallium administration in rat kidney. by Sho Sugahara, Kana Unuma, Shuheng Wen, Takeshi Funakoshi, Toshihiko Aki, Koichi Uemura

“…Transcriptome analysis using DNA microarray of the rat kidney 2 and 5 days after Tl administration showed that cytoplasmic ribosomal proteins are the most upregulated category; many of the genes involved in ribosome biosynthesis were upregulated by Tl administration. …”
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Impacts of Macronutrients on Gene Expression: Recent Evidence to Understand Productive and Reproductive Performance of Livestock by Md. Mahmodul Hasan Sohel, Yusuf Konca, Mehmet Ulas Cinar

“…Recent advancements in molecular genetics studies, for instance, use of next-generation sequencing, microarray and qPCR array to investigate the expression of transcripts, genes, and miRNAs, has a crucial impact on understanding and quantitative measurement of the impact of dietary macronutrients on gene function. …”
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Analysis of Potential Hub Genes for Neuropathic Pain Based on Differential Expression in Rat Models by Jie Bai, Bin Geng, Xingwen Wang, Shenghong Wang, Yayi Xia

“…Differentially expressed genes (DEGs) were predicted by analyzing three NP-related microarray datasets in Gene Expression Omnibus with robust rank aggregation. …”
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Non-replicating Mycobacterium tuberculosis elicits a reduced infectivity profile with corresponding modifications to the cell wall and extracellular matrix. by Joanna Bacon, Luke J Alderwick, Jon A Allnutt, Evelina Gabasova, Robert Watson, Kim A Hatch, Simon O Clark, Rose E Jeeves, Alice Marriott, Emma Rayner, Howard Tolley, Geoff Pearson, Graham Hall, Gurdyal S Besra, Lorenz Wernisch, Ann Williams, Philip D Marsh

“…In contrast to rapidly dividing bacilli, NRP bacteria exhibited a distinct phenotype by accumulating an extracellular matrix rich in free mycolate and lipoglycans, with increased arabinosylation. Microarray studies demonstrated a substantial down-regulation of genes involved in energy metabolism in NRP bacteria. …”
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Development of HuMiChip for functional profiling of human microbiomes. by Qichao Tu, Zhili He, Yan Li, Yanfei Chen, Ye Deng, Lu Lin, Christopher L Hemme, Tong Yuan, Joy D Van Nostrand, Liyou Wu, Xuedong Zhou, Wenyuan Shi, Lanjuan Li, Jian Xu, Jizhong Zhou

“…Here we have developed a functional gene-based microarray for profiling human microbiomes (HuMiChip) with 36,802 probes targeting 50,007 protein coding sequences for 139 key functional gene families. …”
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Pattern specification and immune response transcriptional signatures of pericardial and subcutaneous adipose tissue. by Frank H Lau, Rahul C Deo, Gregory Mowrer, Joshua Caplin, Tim Ahfeldt, Adam Kaplan, Leon Ptaszek, Jennifer D Walker, Bruce R Rosengard, Chad A Cowan

“…Using microarray analysis, we found that: 1) pericardial adipose tissue and isolated pericardial adipocytes both overexpress atherosclerosis-promoting chemokines and 2) pericardial and subcutaneous fat depots, as well as isolated pericardial adipocytes and subcutaneous adipocytes, express specific patterns of homeobox genes. …”
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Clinical case of distal arthrogryposis in combination with epilepsy due to an unbalanced translocation by T. V. Kozhanova, S. S. Zhilina, T. I. Meshсheryakova, N. P. Prokopyeva, A. G. Prityko, N. N. Zavadenko

“…The proband with Freeman–Sheldon syndrome had no mutations in genes associated with distal arthrogryposis. Chromosomal microarray analysis revealed terminal duplication of the long arm of chromosome 9 and terminal microdeletions of the short arm of chromosome 20 – 46,XX.arr[hg38]9q33.3q34.3 (127016168_138124666) x3,20p13 (259113_1003183)x1 in the de novo status. …”
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Nanostructural and transcriptomic analyses of human saliva derived exosomes. by Viswanathan Palanisamy, Shivani Sharma, Amit Deshpande, Hui Zhou, James Gimzewski, David T Wong

“…We then described the morphology, shape, size distribution, and density using atomic force microscopy (AFM). Microarray analysis revealed that 509 mRNA core transcripts are relatively stable and present in the exosomes. …”
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Machine learning models highlight environmental and genetic factors associated with the Arabidopsis circadian clock by Connor Reynolds, Joshua Colmer, Hannah Rees, Ehsan Khajouei, Rachel Rusholme-Pilcher, Hiroshi Kudoh, Antony N. Dodd, Anthony Hall

“…ChronoGauge can predict a plant’s circadian time with high accuracy across unseen Arabidopsis bulk RNA-seq and microarray samples, and can be further applied to make non-random predictions across samples in non-model species, including field samples. …”
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