Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells. by Judith Reichmann, James H Crichton, Monika J Madej, Mary Taggart, Philippe Gautier, Jose Luis Garcia-Perez, Richard R Meehan, Ian R Adams

“…Here we show, and experimentally verify, that cryptic repetitive element probes present in Illumina and Affymetrix gene expression microarray platforms can accurately and sensitively monitor repetitive element expression data. …”
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GeneRetriever: software to extract all genes and transcripts in between two genetic markers to assist design of human custom microarrays by Mathieu Clément-Ziza, Yehuda Brody, Arnold Munnich, Stanislas Lyonnet, Claude Besmond

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Microarray Analyses of Genes Differentially Expressed by Diet (Black Beans and Soy Flour) during Azoxymethane-Induced Colon Carcinogenesis in Rats by Elizabeth A. Rondini, Maurice R. Bennink

“…Rats were sacrificed after 31 weeks, and microarrays were conducted on RNA isolated from the distal colonic mucosa. …”
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A Comparative Analysis of the Roles of von Willebrand Factor and ADAMTS13 in Hepatocellular Carcinoma: A Bioinformatics and Microarray-Based Study by Durmuş Ayan, Şerife Buket Bozkurt Polat, Ergül Bayram, Esma Özmen, Fatma Esin Aydın, Serpil Ersan

“…Although these results are promising, they highlight the complexity of the interplay between <i>VWF</i> and <i>ADAMTS13</i> in HCC progression. According to microarray data, while VWF expression levels were significantly downregulated, ADAMTS13 expression levels were significantly upregulated in HCC compared with the control in the GEO database. …”
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Integrated microarray analysis of HPV of Mus musculus revealed the proteasome subunit beta type 6 gene as a potential biomarker by Mallari Praveen, Somdutt Mujwar, Swanti Gupta

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CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. by Corinna Lau, Ståle Nygård, Hilde Fure, Ole Kristoffer Olstad, Marit Holden, Knut Tore Lappegård, Ole-Lars Brekke, Terje Espevik, Eivind Hovig, Tom Eirik Mollnes

“…Combined inhibition of a key complement component (C3 and C5) and TLR-co-receptor CD14 has been shown to attenuate certain systemic inflammatory responses. Using DNA microarray and gene annotation analyses, we aimed to decipher the effect of combined inhibition of C3 and CD14 on the transcriptional response to bacterial challenge in human whole blood. …”
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Multiplex peptide microarray profiling of antibody reactivity against neglected tropical diseases derived B-cell epitopes for serodiagnosis in Zimbabwe. by Arthur Vengesai, Thajasvarie Naicker, Herald Midzi, Maritha Kasambala, Tariro L Mduluza-Jokonya, Simbarashe Rusakaniko, Francisca Mutapi, Takafira Mduluza

“…In this framework, we present a pilot study to design and produce a peptide microarray for the integrated surveillance of neglected tropical diseases. …”
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Silver coated porous silicon microarray SERS platform for detecting aflatoxin B1 fumonisin B1 and ochratoxin A by Rohit Kumar Singh, Narsingh R. Nirala, Sudharsan Sadhasivam, Divagar Muthukumar, Edward Sionov, Giorgi Shtenberg

“…Herein, we present a newly developed nanostructured microarray based on silver-coated porous silicon (Ag-pSi) used as a surface-enhanced Raman scattering (SERS) transducer. …”
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MORPHOLOGY AND DISTRIBUTION OF Α-NAPHTHYL BUTIRATE ESTERASE AND NAPHTHOL AS-D CHLOROACETATE ESTERASE IN NORMAL MYELOMONOCYTIC PRECURSORS STUDIED BY THE CELL MICROARRAY by O. S. Fedyanina, A. O. Zakirova, A. E. Zadorozhnaya, N. M. Kapranov, A. N. Khvastunova, P. A. Yadgarova, А. V. Filatov, O. S. Burova, F. I. Ataullakhanov, S. А. Kuznetsova

Subjects: “…cell microarray…”
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Determination of morphology and immunophenotype of circulating lymphoma cells in patients with splenic marginal zone lymphoma using an anti-CD antibody microarray by A. N. Khvastunova, L. S. Al-Radi, O. S. Fedyanina, U. L. Julhakyan, N. M. Kapranov, A. O. Zakirova, S. A. Lugovskaya, E. V. Naumova, F. I. Ataullakhanov, S. A. Kuznetsova

Subjects: “…anti-cd antibody microarray…”
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Prenatal diagnosis and molecular cytogenetic analysis of pure chromosome 10p15.3 microdeletion using chromosomal microarray analysis by Na Zhang, Nan Huang, Yu’e Chen, Xinying Chen, Jianlong Zhuang

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Oral Bacteria of Children with Turner Syndrome by Gülcan Ünsal, Nursen Topçuoğlu, Yeliz Güven, Şükran Poyrazoğlu, Güven Külekçi, Oya Aktören

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Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes by Li A Kung, Sheng‐Ce Tao, Jiang Qian, Michael G Smith, Michael Snyder, Heng Zhu

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Mechanism and relevance of necroptosis to immune microenvironment of periodontitis: A pilot study by ZHENG Zhanglong, LI Jia, JIANG Jirui, SHAN Zhengnan, LI Shengjiao

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A systems approach to prion disease by Daehee Hwang, Inyoul Y Lee, Hyuntae Yoo, Nils Gehlenborg, Ji‐Hoon Cho, Brianne Petritis, David Baxter, Rose Pitstick, Rebecca Young, Doug Spicer, Nathan D Price, John G Hohmann, Stephen J DeArmond, George A Carlson, Leroy E Hood

Subjects: “…microarray…”
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Upregulation of mitochondrial function is associated with advanced prostate cancer by Valentin Baumgartner, Thomas Paul Scherer, Ashkan Mortezavi, Niels Rupp, Holger Moch, Peter Wild, Susanne Dettwiler, Miriam Wanner, Dominik Enderlin, Souzan Salemi, Daniel Eberli

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Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes by Brian Cox, Thomas Kislinger, Dennis A Wigle, Anitha Kannan, Kevin Brown, Tadashi Okubo, Brigid Hogan, Igor Jurisica, Brendan Frey, Janet Rossant, Andrew Emili

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Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing by Dean Thompson, Jemma Castle, Martin Sill, Stefan M. Pfister, Simon Bailey, Debbie Hicks, Steven C. Clifford, Edward C. Schwalbe

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Differential adipose tissue gene expression profiles in abacavir treated patients that may contribute to the understanding of cardiovascular risk: a microarray study. by Mohsen Shahmanesh, Kenneth Phillips, Meg Boothby, Jeremy W Tomlinson

“…Groups were age, ethnicity, weight, biochemical profile, and pre-treatment CD4 count matched. Microarray data was generated using the Agilent Whole Human Genome Microarray. …”
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Biomarker Identification for Prostate Cancer and Lymph Node Metastasis from Microarray Data and Protein Interaction Network Using Gene Prioritization Method by Carlos Roberto Arias, Hsiang-Yuan Yeh, Von-Wun Soo

“…We present biomarker identification problem using gene prioritization method called gene prioritization from microarray data based on shortest paths, extended with structural and biological properties and edge flux using voting scheme (GP-MIDAS-VXEF). …”
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