Analysis of whole genome sequence of strain "0" of avian infectious laryngotracheitis virus by A. A. Kozlov, N. G. Zinyakov, S. N. Kolosov, N. S. Mudrak, I. A. Chvala

“…The mapped nucleotide sequence has been deposited in the international GenBank database under the accession number KU128407. …”
Get full text

Fungal phoenix rising from the ashes? by M.J. Wingfield, M.P.A. Coetzee, P.W. Crous, D. Six, B.D. Wingfield

“…The ITS and IGS-1 regions were sequenced and compared to sequences of Armillaria spp. available on GenBank. Cladograms were generated using ITS sequences to determine the phylogenetic relationship of the isolates with other Armillaria spp. …”
Get full text

dataFishing: An efficient Python tool and user-friendly web-form for mining mitochondrial and chloroplast sequences, taxonomic, and biodiversity data by Luan Rabelo, Davidson Sodré, Oscar David Albito Balcázar, Murilo Furtado do Rosário, Aurycéia Jaquelyne Guimarães-Costa, Grazielle Gomes, Iracilda Sampaio, Marcelo Vallinoto

“…NCBI GenBank and BOLD Systems are important databases for biodiversity research, in which the deposited data can be used for various purposes, such as species identification analysis, evolutionary studies, biodiversity monitoring, as well as assessing the effects of possible climate changes on species distributions. …”
Get full text

VARIABILITY OF MITOCHONDRIAL CYTOCHROME OXYDASE SUBUNIT I GENE SEQUENCE IN SPECIES OF THE GENERA AEDES AND OCHLEROTATUS (DIPTERA: CULICIDAE) by N. V. Khrabrova, Yu. V. Andreeva, O. V. Vaulin, S. S. Alekseeva, A. K. Sibataev

“…Sequence variation in the 538-bp fragment from the 5′ end of the COI region was analyzed to test its usefulness in the identification of 15 mosquito species of the genera Aedes and Ochlerotatus (Diptera: Culicidae) from Tomsk and Kemerovo regions and 14 species from GenBank. The divergences between congeneric species averaged 7,8 % (from 0,7 to 13,1 %), whereas those for conspecific individuals averaged 0,57 % (0 to 1,6 %). …”
Get full text

Bioadsorptive Removal of the Pollutant Zn(II) from Wastewater by Delftia tsuruhatensis Biomass by Samiah Hamad Al-Mijalli

“…D. tsuruhatensis SA-101 has been assigned the accession number MW629784 in the GenBank database. The optimal pH and reaction contact time for Zn(II) removal by D. tsuruhatensis SA-101 were 6.0 and 30 min, respectively. …”
Get full text

GEOMETRIC PROPERTIES OF EVOLUTIONARY DISTANCES by V. M. Efimov, M. A. Melchakova, V. Yu. Kovaleva

“…The applicability of the EPQ distance is illustrated by the example of a cytochrome b sequence set of 12 rodent species from West Siberia and Altai, taken from the GenBank, and compared with the results of the use of the LogDet-distance.…”
Get full text

Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, by Mohammad Nazrul Islam, Shirin Sultana, Md. Jobaidul Alam

“…The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198).…”
Get full text

Plant Growth Promoting of Endophytic Sporosarcina aquimarina SjAM16103 Isolated from the Pneumatophores of Avicennia marina L. by S. Rylo Sona Janarthine, P. Eganathan

“…Nucleotide sequence of this strain has been deposited in the GenBank under accession number GU930359. This endophytic bacterium produced 2.37 μMol/mL of indole acetic acid and siderophore as it metabolites. …”
Get full text

First microscopic and molecular identification of Cryptosporidium spp. in fat sand rats (Psammomys obesus) in Egypt and their potential zoonotic implications by Sara Abdel-Aal Mohamed, Fatma A. S. Anwar, Ahmed Gareh, Marwa M. I. Ghallab, Remigio Martínez, Asmaa Aboelabbas Gouda, Fatemah Enad Alajmi, Hind Alzaylaee, Ignacio García-Bocanegra, Ignacio García-Bocanegra, Ehab Kotb Elmahallawy, Ehab Kotb Elmahallawy

“…A subset of these positive samples by PCR was subjected to sequencing, with the resulting sequences deposited in GenBank™ and analyzed through phylogenetic methods.ResultsConventional microscopy revealed that 46.7% (70/150; 95% CI: 38.7–54.6) of the analyzed stool samples contained structures consistent with Cryptosporidium oocysts. …”
Get full text

Distribution and genetic diversity of three apple viruses in Belarus by P. V. Kuzmitskaya, O. Yu. Urbanovich

“…Estimates of selective pressure on the genome fragments of ACLSV, ASPV and ASGV obtained in this study as well as homologous sequences from the GenBank database indicate negative selection, except for one codon in the sequence of the ACLSV coat protein, which is under positive selection. …”
Get full text

Specific PCR Primers Based on Cytochrome-b Gene for Molecular Detection of Javan Mongoose (Herpestes javanicus) by Sena Adi Subrata, Subeno Subeno, Atus Syahbudin

“…The DNA sequences were of 19 Javan carnivore collected from GenBank (NCBI). PCR primers were designed and tested using both in-silico and in-vitro techniques. …”
Get full text

Correction to: Ophiostomatoid fungi associated with Ips subelongatus, including eight new species from northeastern China by Zheng Wang, Ya Liu, Huimin Wang, Xianjing Meng, Xuewei Liu, Cony Decock, Xingyao Zhang, Quan Lu

“…Following publication of the original article [1], the authors reported that Table 1 contained some errors in the GenBank number of BT gene. The correct Table 1 is presented below.…”
Get full text

First report of wilt disease in cashew (Anacardium occidentale L.) caused by Fusarium decemcellulare in Kerala, India by A. V. Meera Manjusha, P. K. Laya, Amal Premachandran, M. Veena

“…The culture of the fungus has been deposited with the National Fungal Culture Collection of India at Agharkar Research Institute, Pune, India with accession number NFCCI 4801, and sequence of the fungus was deposited at GenBank of NCBI with accession number OP942472.…”
Get full text

Purification and Optimization of Extracellular Lipase from a Novel Strain Kocuria flava Y4 by Adyasa Barik, Sudip Kumar Sen, Geetanjali Rajhans, Sangeeta Raut

“…In this study, the extracellular lipase activity of Kocuria flava Y4 (GenBank accession no. MT773277), isolated from Dioscorea villosa during our previous study, was regulated by different physicochemical parameters, such as pH, temperature, shaking speed, and incubation time. …”
Get full text

Genetic Diversity in Passiflora Species Assessed by Morphological and ITS Sequence Analysis by Shiamala Devi Ramaiya, Japar Sidik Bujang, Muta Harah Zakaria

“…The final dataset of aligned sequences from nine studied Passiflora accessions and 30 other individuals obtained from GenBank database (NCBI) yielded one most parsimonious tree with two strongly supported clades. …”
Get full text

Application of internal transcribed spacer (ITS) sequences for identifying Anoectochilus setaceus Blume in Thanh Hoa, Vietnam by B. B. Thinh, L. D. Chac, L. T.M. Thu

“…The findings identified the samples as the same species and showed 99% similarity to the ITS gene sequence of A. roxburghii (Wall.) Lindl. published in GenBank, GQ328774. This study also demonstrates that the method employing internal transcribed spacer (ITS) sequences is an effective tool to identify A. setaceus taxa.…”
Get full text

DELLA MUTATIONS IN PLANTS WITH SPECIAL EMPHASIS ON WHEAT by G. A. Chebotar, S. V. Chebotar, Yu. M. Sivolap

“…The aim of the current study is to estimate the genetic similarity of DELLA nucleotide and amino acid sequences stored in GenBank and to identify mutant and wild type alleles that encode DELLAs in modern Ukrainian winter bread wheat varieties. …”
Get full text

Molecular and Phylogenetic Analysis of Bovine Papillomavirus Type 1: First Report in Iraqi Cattle by Mohammed A. Hamad, Ahmed M. Al-Shammari, Shoni M. Odisho, Nahi Y. Yaseen

“…A partial sequence for the E2, L2 genes, and complete sequence for the E5 gene were deposited in GenBank. Phylogenetic analysis confirmed the presence of BPV-1 and showed that the origin of infection may be imported European cattle. …”
Get full text

First record of Phlebia tremelloidea (Bres.) Parmasto in Italy by Carolina Elena Girometta, Annarosa Bernicchia, Anthea Desiderio, Elena Savino

“…Molecular barcode (ITS region) performed on the dried basidioma confirmed the macro- and micromorphological identification; besides, sequences from LSU, SSU and two sub-regions in RPB2 have been deposited as well in GenBank for the first time. This study increases the knowledge about distribution and ecology of P. tremelloidea and provides new molecular data in support of the taxonomic debate on this species and its relatives.…”
Get full text

Ophthalmomyiasis Case Caused by Two Blow Fly (Diptera: Calliphoridae) Species in North America by Taylor B. Parker, Kelly A. Meiklejohn, Gregory A. Dahlem, Ralph C. Eagle, Marius J. Heersink

“…A representative subsample of five larvae was used for taxonomic identification via two approaches (a) DNA analysis, via sequencing of the complete mitochondrial genome (mtGenome) and comparison of the mtGenome and mitochondrial COI barcode region to GenBank, and (b) morphology, examination of the posterior spiracles using microscopy, and comparison to published larval descriptions of blow flies. …”
Get full text