Research on dependencies in simulated DNA sequences by Tomas Rekašius

“… Many publications in bio-informatics deal with long-range correlation of nucleotides in DNA sequences, which implies that such sequences are complicated systems with hierarchical structure. …”
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REPETITIVE DNA SEQUENCES IN THE GENOMES OF PLANTS by A. B. Shcherban

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Numerical Characterization of DNA Sequence Based on Dinucleotides by Xingqin Qi, Edgar Fuller, Qin Wu, Cun-Quan Zhang

“…Sequence comparison is a primary technique for the analysis of DNA sequences. In order to make quantitative comparisons, one devises mathematical descriptors that capture the essence of the base composition and distribution of the sequence. …”
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Compiling Multicopy Single-Stranded DNA Sequences from Bacterial Genome Sequences by Wonseok Yoo, Dongbin Lim, Sangsoo Kim

“…Based on the conserved features in the eight known msDNA sequences, we developed a detection method and applied it to scan National Center for Biotechnology Information (NCBI) RefSeq bacterial genome sequences. …”
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Aspergillus section Versicolores: nine new species and multilocus DNA sequence based phylogeny by Z. Jurjevic, S.W. Peterson, B.W. Horn

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Error Correction for Check Digit Systems over p-Groups and Applications to DNA Sequences by Louis Beaugris

“…We also propose an application to DNA sequences.…”
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An Efficient Approach to Mining Maximal Contiguous Frequent Patterns from Large DNA Sequence Databases by Md. Rezaul Karim, Md. Mamunur Rashid, Byeong-Soo Jeong, Ho-Jin Choi

Subjects: “…DNA sequence…”
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VISUALIZATION OF CHROMOSOME-SPECIFIC DNA SEQUENCES BY FLUORESCENCE IN SITU HYBRIDIZATION OF MICRODISSECTION DNA PROBES WITH METAPHASE CHROMOSOMES by A. G. Bogomolov, K. S. Zadesenets, T. V. Karamysheva, N. L. Podkolodnyi, N. B. Rubtsov

Subjects: “…chromosome-specific dna sequences…”
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An Unusual Case of Streptococcus anginosus Group Pyomyositis Diagnosed Using Direct 16S Ribosomal DNA Sequencing by Andrew Walkty, John M Embil, Kim Nichol, James Karlowsky

“…The diagnosis was ultimately confirmed using 16S ribosomal DNA sequencing of purulent fluid obtained from a muscle abscess aspirate. …”
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Assessment of Spoilage Microbiota of Rainbow Trout (Oncorhynchus mykiss) during Storage by 16S rDNA Sequencing by Guangqing Du, Yuanming Gai, Hui Zhou, Shaoping Fu, Dawei Zhang

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Retrospective analysis of 300 microbial cell-free DNA sequencing results in routine blood stream infection diagnostics by Claudio Neidhöfer, Claudio Neidhöfer, Niklas Klein, Niklas Klein, Aylin Yürüktümen, Tessa Hattenhauer, Rebekka Mispelbaum, Christian Bode, Tobias A. W. Holderried, Achim Hoerauf, Marijo Parčina

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Taxonomy and DNA Sequencing of Crematogaster coriaria Mayr, 1872 (Hymenoptera: Formicidae), with Redescriptions of the Worker, Queen, and Male Castes by Shingo Hosoishi, Kazuo Ogata

“…The polymorphism of C. coriaria Mayr, 1872, was also discussed. DNA sequences were generated for C. coriaria Mayr, 1872, using an amplification of second half region of the mitochondrial gene COI with a total of 711 bp. …”
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Exploring changes in metabolites and fecal microbiota of advanced gastric cancer based on plasma metabolomics and 16S rDNA sequencing by Xinyi Feng, Yu Zhang, Jun Feng, Zhongjun Li, Zhi Zhang, Lin Zhu, Ruoyu Zhou, Haibo Wang, Xiaojun Dai, Yanqing Liu

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Analysis of KRAS Mutations of Exon 2 Codons 12 and 13 by SNaPshot Analysis in Comparison to Common DNA Sequencing by Rica Zinsky, Servet Bölükbas, Holger Bartsch, Joachim Schirren, Annette Fisseler-Eckhoff

“…Under this aspect, the sensitivity and specificity of the SNaPshot analysis in comparison to the commonly used DNA sequencing was checked. We examined KRAS mutations in exon 2 codons 12 and 13 with DNA sequencing and SNaPshot analysis in 100 formalin-fixed paraffin-embedded tumor tissue samples of pancreatic carcinoma, colorectal carcinoma, and nonsmall cell lung cancer specimens of the primary tumor or metastases. 40% of these samples demonstrated mutated KRAS genes using sequencing and SNaPshot-analysis; additional five samples (45/100) were identified only with the SNaPshot. …”
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Combined biochemical profiling and DNA sequencing in the expanded newborn screening for inherited metabolic diseases: the experience in an Italian reference center by Simona Fecarotta, Lorenzo Vaccaro, Alessandra Verde, Marianna Alagia, Alessandro Rossi, Chiara Colantuono, Maria Teresa Cacciapuoti, Patrizia Annunziata, Sara Riccardo, Antonio Grimaldi, Tonya Fusco, Rosa De Santis, Fernando Barretta, Lucia Albano, Daniela Crisci, Fabiana Vallone, Antonietta Tarallo, Marcella Cesana, Nicola Brunetti-Pierri, Giulia Frisso, Margherita Ruoppolo, Davide Cacchiarelli, Giancarlo Parenti

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Population Genetic Analysis of Lobelia rhynchopetalum Hemsl. (Campanulaceae) Using DNA Sequences from ITS and Eight Chloroplast DNA Regions by Mulatu Geleta, Tomas Bryngelsson

“…DNA sequence data from the internal transcribed spacer of nuclear ribosomal DNA and eight chloroplast DNA regions were used to investigate haplotypic variation and population genetic structure of the Afroalpine giant lobelia, Lobelia rhynchopetalum. …”
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Plasma mcfDNA Sequencing May Improve Usual Care Diagnostics to Detect HHV-8 Among Outpatient People with Advanced HIV by Sarah Park, Brian Epling, Morgan Richey, Daniel Lupu, Mona Mughar, Irini Sereti

“…The potential added benefit of the detection of other pathogens by mcfDNA sequencing may be particularly relevant for this population. …”
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Combined metabolomics and 16S rDNA sequence analyses of the gut microbiome reveal the action mechanism of Fructus Akebiae against hepatic fibrosis by Rong-Rong Wu, Duo-Rui Nie, Fang-Hui He, Zhi-Hang Li, Fei Xu, Fei Xu, Fei Xu

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Genetic Variation for Wild Populations of the Rare and Endangered Plant <i>Glyptostrobus pensilis</i> Based on Double-Digest Restriction Site-Associated DNA Sequencing by Yongrong Huang, Yu Li, Xiaojie Hong, Suzhen Luo, Dedan Cai, Xiangxi Xiao, Yunpeng Huang, Yushan Zheng

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A Short Report on the Markov Property of DNA Sequences on 200-bp Genomic Units of ENCODE/Broad ChromHMM Annotations: A Computational Perspective by Hyun-Seok Park

“…Our aim was to identify the possible relationship between DNA sequences and the newly built chromatin states based on the integrated ChromHMM datasets of different cells and tissue types.…”
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