An alignment-free method for phylogeny estimation using maximum likelihood by Tasfia Zahin, Md. Hasin Abrar, Mizanur Rahman Jewel, Tahrina Tasnim, Md. Shamsuzzoha Bayzid, Atif Rahman

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A new alignment-free method: K-mer Subsequence Natural Vector (K-mer SNV) for classification of fungi by Lily He, Mochao Huang, Gulinisha Yiming, Yi Zhu, Ruowei Liu, Jinghan Chen, Stephen S. T. Yau

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An alignment- and reference-free strategy using k-mer present pattern for population genomic analyses by Guohui Shi, Yi Dai, Da Zhou, Mengmeng Chen, Jiaqi Zhang, Yilong Bi, Shuai Liu, Qi Wu

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Alignment-free viral sequence classification at scale by Daniel J. van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter, Tulio de Oliveira, Joicymara S. Xavier, The INFORM Africa research study group

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Specificity Analysis of Genome Based on Statistically Identical K-Words With Same Base Combination by Hyein Seo, Yong-Joon Song, Kiho Cho, Dong-Ho Cho

Subjects: “…Alignment-free…”
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GRAMEP: an alignment-free method based on the maximum entropy principle for identifying SNPs by Matheus Henrique Pimenta-Zanon, André Yoshiaki Kashiwabara, André Luís Laforga Vanzela, Fabricio Martins Lopes

Subjects: “…Alignment-free methods…”
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Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo by Borée, Cyprien, Giraud, Mathieu, Salson, Mikaël

Subjects: “…Spaced seeds, Aho-Corasick Automaton, Alignment-free algorithm, Immune repertoire, VDJ recombinations, Adaptive immune receptor repertoire…”
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CGRclust: Chaos Game Representation for twin contrastive clustering of unlabelled DNA sequences by Fatemeh Alipour, Kathleen A. Hill, Lila Kari

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