INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools.
low- and middle-income countries (LMIC), hindering the generation of actionable insights to inform policy and decision-making. This paper proposes a pan-African, Findable, Accessible, Interoperable, and Reusable (FAIR) research architecture and infrastructure named the INSPIRE datahub. This cloud-ba...
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| Format: | Article |
| Language: | en_US |
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Kabale University
2024
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| Online Access: | http://hdl.handle.net/20.500.12493/2024 |
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| author | Bhattacharjee, Tathagata Kiwuwa-Muyingo, Sylvia Kanjala, Chifundo Maoyi, Molulaqhooa L. Amadi, David Ochola, Michael Kadengye, Damazo Gregory, Arofan Kiragga, Agnes Amelia, Taylor Greenfield, Jay Slaymaker, Emma Todd, Jim INSPIRE Network8 |
| author_facet | Bhattacharjee, Tathagata Kiwuwa-Muyingo, Sylvia Kanjala, Chifundo Maoyi, Molulaqhooa L. Amadi, David Ochola, Michael Kadengye, Damazo Gregory, Arofan Kiragga, Agnes Amelia, Taylor Greenfield, Jay Slaymaker, Emma Todd, Jim INSPIRE Network8 |
| author_sort | Bhattacharjee, Tathagata |
| collection | KAB-DR |
| description | low- and middle-income countries (LMIC), hindering the generation of actionable insights to inform policy and decision-making. This paper proposes a pan-African, Findable, Accessible, Interoperable, and Reusable (FAIR) research architecture and infrastructure named the INSPIRE datahub. This cloud-based Platform-as-a-Service (PaaS) and on-premises setup aims to enhance the discovery, integration, and analysis of clinical, population-based surveys, and other health data sources.
Methods: The INSPIRE datahub, part of the Implementation Network for Sharing Population Information from Research Entities (INSPIRE), employs the Observational Health Data Sciences and Informatics (OHDSI) open-source stack of tools and the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) to harmonize data from African longitudinal
population studies. Operating on Microsoft Azure and Amazon Web Services cloud platforms, and on on-premises servers, the architecture offers adaptability and scalability for other cloud providers and technology infrastructure. The OHDSI-based tools enable a comprehensive suite of services for data pipeline development, profiling, mapping, extraction, transformation, loading, documentation, anonymization, and analysis.
Results: The INSPIRE datahub’s “On-ramp” services facilitate the integration of data and metadata from diverse sources into the OMOP CDM. The datahub supports the implementation of OMOP CDM across data producers, harmonizing source data semantically with standard vocabularies and structurally conforming to OMOP table structures. Leveraging OHDSI tools,
the datahub performs quality assessment and analysis of the transformed data. It ensures FAIR data by establishing metadata flows, capturing provenance throughout the ETL processes, and providing accessible metadata for potential users. The ETL provenance is documented in a machine- and human-readable Implementation Guide (IG), enhancing transparency and usability. |
| format | Article |
| id | oai:idr.kab.ac.ug:20.500.12493-2024 |
| institution | KAB-DR |
| language | en_US |
| publishDate | 2024 |
| publisher | Kabale University |
| record_format | dspace |
| spelling | oai:idr.kab.ac.ug:20.500.12493-20242024-08-01T00:02:24Z INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. Bhattacharjee, Tathagata Kiwuwa-Muyingo, Sylvia Kanjala, Chifundo Maoyi, Molulaqhooa L. Amadi, David Ochola, Michael Kadengye, Damazo Gregory, Arofan Kiragga, Agnes Amelia, Taylor Greenfield, Jay Slaymaker, Emma Todd, Jim INSPIRE Network8 INSPIRE datahub Pan-African Integrated suite Services Harmonising Longitudinal population Health Data OHDSI tools low- and middle-income countries (LMIC), hindering the generation of actionable insights to inform policy and decision-making. This paper proposes a pan-African, Findable, Accessible, Interoperable, and Reusable (FAIR) research architecture and infrastructure named the INSPIRE datahub. This cloud-based Platform-as-a-Service (PaaS) and on-premises setup aims to enhance the discovery, integration, and analysis of clinical, population-based surveys, and other health data sources. Methods: The INSPIRE datahub, part of the Implementation Network for Sharing Population Information from Research Entities (INSPIRE), employs the Observational Health Data Sciences and Informatics (OHDSI) open-source stack of tools and the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) to harmonize data from African longitudinal population studies. Operating on Microsoft Azure and Amazon Web Services cloud platforms, and on on-premises servers, the architecture offers adaptability and scalability for other cloud providers and technology infrastructure. The OHDSI-based tools enable a comprehensive suite of services for data pipeline development, profiling, mapping, extraction, transformation, loading, documentation, anonymization, and analysis. Results: The INSPIRE datahub’s “On-ramp” services facilitate the integration of data and metadata from diverse sources into the OMOP CDM. The datahub supports the implementation of OMOP CDM across data producers, harmonizing source data semantically with standard vocabularies and structurally conforming to OMOP table structures. Leveraging OHDSI tools, the datahub performs quality assessment and analysis of the transformed data. It ensures FAIR data by establishing metadata flows, capturing provenance throughout the ETL processes, and providing accessible metadata for potential users. The ETL provenance is documented in a machine- and human-readable Implementation Guide (IG), enhancing transparency and usability. 2024-06-04T16:57:23Z 2024-06-04T16:57:23Z 2024 Article Bhattacharjee, T. et al. (2024). INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. Kabale: Kabale University. http://hdl.handle.net/20.500.12493/2024 en_US application/pdf Kabale University |
| spellingShingle | INSPIRE datahub Pan-African Integrated suite Services Harmonising Longitudinal population Health Data OHDSI tools Bhattacharjee, Tathagata Kiwuwa-Muyingo, Sylvia Kanjala, Chifundo Maoyi, Molulaqhooa L. Amadi, David Ochola, Michael Kadengye, Damazo Gregory, Arofan Kiragga, Agnes Amelia, Taylor Greenfield, Jay Slaymaker, Emma Todd, Jim INSPIRE Network8 INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title | INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title_full | INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title_fullStr | INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title_full_unstemmed | INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title_short | INSPIRE Datahub: A Pan-African Integrated Suite of Services For Harmonising Longitudinal Population Health Data Using OHDSI Tools. |
| title_sort | inspire datahub a pan african integrated suite of services for harmonising longitudinal population health data using ohdsi tools |
| topic | INSPIRE datahub Pan-African Integrated suite Services Harmonising Longitudinal population Health Data OHDSI tools |
| url | http://hdl.handle.net/20.500.12493/2024 |
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