Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor
Soluble sugars, organic acids, and vitamin C (AsA) are the major metabolites contributing to strawberry fruit quality. To date, the metabolomics and genetic information for the above metabolites are still limited. In this study, we integrated the metabolome and transcriptome in two cultivars with re...
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| Format: | Article |
| Language: | English |
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Maximum Academic Press
2024-01-01
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| Series: | Vegetable Research |
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| Online Access: | https://www.maxapress.com/article/doi/10.48130/vegres-0024-0011 |
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| author | Lingzhi Wei Huabo Liu Yang Ni Rong Xiong Shuangtao Li Rui Sun Yongqing Wei Hongli Zhang Jing Dong Linlin Chang Chuanfei Zhong Yuntao Zhang Jian Sun Guixia Wang Yongshun Gao |
| author_facet | Lingzhi Wei Huabo Liu Yang Ni Rong Xiong Shuangtao Li Rui Sun Yongqing Wei Hongli Zhang Jing Dong Linlin Chang Chuanfei Zhong Yuntao Zhang Jian Sun Guixia Wang Yongshun Gao |
| author_sort | Lingzhi Wei |
| collection | DOAJ |
| description | Soluble sugars, organic acids, and vitamin C (AsA) are the major metabolites contributing to strawberry fruit quality. To date, the metabolomics and genetic information for the above metabolites are still limited. In this study, we integrated the metabolome and transcriptome in two cultivars with remarkably different fruit quality. The significant difference of fructose, sucrose, and malic acid content illustrated the flavor discrepancy in two cultivars, in addition, the recycling pathway was showed to play a vital role in AsA accumulation. Conjoint analysis implied the key metabolizing enzymes related to soluble sugars, organic acids and AsA, respectively, further construction of co-expression regulatory networks identified the transcription factors for the above structural genes. Specifically, it was suggested that the accumulation of soluble sugars and AsA were highly likely to be synchronously regulated by MYB, bHLH, NAC, AP2 and bZIP family members during fruit ripening. This work provides new insights into the accumulation and regulation of core metabolites in strawberry fruits, and the identified gene resources are promising for further improvement of strawberry fruit quality with molecular breeding. |
| format | Article |
| id | doaj-art-fe96e05e29bd4ad3a9486d79e4b1fccd |
| institution | DOAJ |
| issn | 2769-0520 |
| language | English |
| publishDate | 2024-01-01 |
| publisher | Maximum Academic Press |
| record_format | Article |
| series | Vegetable Research |
| spelling | doaj-art-fe96e05e29bd4ad3a9486d79e4b1fccd2025-08-20T03:18:33ZengMaximum Academic PressVegetable Research2769-05202024-01-014111110.48130/vegres-0024-0011vegres-0024-0011Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavorLingzhi Wei0Huabo Liu1Yang Ni2Rong Xiong3Shuangtao Li4Rui Sun5Yongqing Wei6Hongli Zhang7Jing Dong8Linlin Chang9Chuanfei Zhong10Yuntao Zhang11Jian Sun12Guixia Wang13Yongshun Gao14Institute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaMiyun District Agricultural Technology Extension Station, Beijing 101599, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaInstitute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100093, ChinaSoluble sugars, organic acids, and vitamin C (AsA) are the major metabolites contributing to strawberry fruit quality. To date, the metabolomics and genetic information for the above metabolites are still limited. In this study, we integrated the metabolome and transcriptome in two cultivars with remarkably different fruit quality. The significant difference of fructose, sucrose, and malic acid content illustrated the flavor discrepancy in two cultivars, in addition, the recycling pathway was showed to play a vital role in AsA accumulation. Conjoint analysis implied the key metabolizing enzymes related to soluble sugars, organic acids and AsA, respectively, further construction of co-expression regulatory networks identified the transcription factors for the above structural genes. Specifically, it was suggested that the accumulation of soluble sugars and AsA were highly likely to be synchronously regulated by MYB, bHLH, NAC, AP2 and bZIP family members during fruit ripening. This work provides new insights into the accumulation and regulation of core metabolites in strawberry fruits, and the identified gene resources are promising for further improvement of strawberry fruit quality with molecular breeding.https://www.maxapress.com/article/doi/10.48130/vegres-0024-0011metabolometranscriptomestrawberryfruit flavorco-expressionregulatory factor |
| spellingShingle | Lingzhi Wei Huabo Liu Yang Ni Rong Xiong Shuangtao Li Rui Sun Yongqing Wei Hongli Zhang Jing Dong Linlin Chang Chuanfei Zhong Yuntao Zhang Jian Sun Guixia Wang Yongshun Gao Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor Vegetable Research metabolome transcriptome strawberry fruit flavor co-expression regulatory factor |
| title | Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| title_full | Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| title_fullStr | Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| title_full_unstemmed | Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| title_short | Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| title_sort | integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor |
| topic | metabolome transcriptome strawberry fruit flavor co-expression regulatory factor |
| url | https://www.maxapress.com/article/doi/10.48130/vegres-0024-0011 |
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