Enabling a fast annotation process with the Table2Annotation tool
In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to ident...
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| Format: | Article |
| Language: | English |
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BioMed Central
2020-06-01
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| Series: | Genomics & Informatics |
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| Online Access: | http://genominfo.org/upload/pdf/gi-2020-18-2-e19.pdf |
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| _version_ | 1832572919674306560 |
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| author | Pierre Larmande Kazim Muhammed Jibril |
| author_facet | Pierre Larmande Kazim Muhammed Jibril |
| author_sort | Pierre Larmande |
| collection | DOAJ |
| description | In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching. |
| format | Article |
| id | doaj-art-fd719e16da514a66a077cd597368043a |
| institution | Kabale University |
| issn | 2234-0742 |
| language | English |
| publishDate | 2020-06-01 |
| publisher | BioMed Central |
| record_format | Article |
| series | Genomics & Informatics |
| spelling | doaj-art-fd719e16da514a66a077cd597368043a2025-02-02T06:32:05ZengBioMed CentralGenomics & Informatics2234-07422020-06-01182e1910.5808/GI.2020.18.2.e19607Enabling a fast annotation process with the Table2Annotation toolPierre Larmande0Kazim Muhammed Jibril1 DIADE, Univ. Montpellier, IRD, Montpellier, France ICTLab, USTH, Hanoi, VietnamIn semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching.http://genominfo.org/upload/pdf/gi-2020-18-2-e19.pdfbioinformaticsontologiessemantic annotation |
| spellingShingle | Pierre Larmande Kazim Muhammed Jibril Enabling a fast annotation process with the Table2Annotation tool Genomics & Informatics bioinformatics ontologies semantic annotation |
| title | Enabling a fast annotation process with the Table2Annotation tool |
| title_full | Enabling a fast annotation process with the Table2Annotation tool |
| title_fullStr | Enabling a fast annotation process with the Table2Annotation tool |
| title_full_unstemmed | Enabling a fast annotation process with the Table2Annotation tool |
| title_short | Enabling a fast annotation process with the Table2Annotation tool |
| title_sort | enabling a fast annotation process with the table2annotation tool |
| topic | bioinformatics ontologies semantic annotation |
| url | http://genominfo.org/upload/pdf/gi-2020-18-2-e19.pdf |
| work_keys_str_mv | AT pierrelarmande enablingafastannotationprocesswiththetable2annotationtool AT kazimmuhammedjibril enablingafastannotationprocesswiththetable2annotationtool |