Whole genome sequencing and annotations of Trametes sanguinea ZHSJ
Abstract Trametes sanguinea belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, Trametes sanguinea ZHSJ (T. sanguinea ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their anno...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2025-08-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-05798-9 |
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| author | Rathna Silviya Lodi Xiuwen Jia Peng Yang Chune Peng Xiaodan Dong Jiandong Han Xiaofei Liu Luzhang Wan Lizeng Peng |
| author_facet | Rathna Silviya Lodi Xiuwen Jia Peng Yang Chune Peng Xiaodan Dong Jiandong Han Xiaofei Liu Luzhang Wan Lizeng Peng |
| author_sort | Rathna Silviya Lodi |
| collection | DOAJ |
| description | Abstract Trametes sanguinea belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, Trametes sanguinea ZHSJ (T. sanguinea ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their annotations. T. sanguinea ZHSJ genome is 41.3243 Mb in length with a total of 135 contigs with N50 contig length 2.8138 Mb. A total of 10886 genes of T. sanguinea ZHSJ were annotated. Further, RNA sequencing and assembly represented 11861 genes, out of these 10,507 genes were annotated with four annotation databases. Moreover, denovo prediction annotation performed by Funannotate represented 12,268 coding genes and simple sequence repeats (SSR) prediction represented total 1,242 SSR and among them 707 were trinucleotide repeat motifs. |
| format | Article |
| id | doaj-art-fa64b45f71134a5298ae499cfe98d7fc |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-08-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-fa64b45f71134a5298ae499cfe98d7fc2025-08-24T11:07:11ZengNature PortfolioScientific Data2052-44632025-08-0112111210.1038/s41597-025-05798-9Whole genome sequencing and annotations of Trametes sanguinea ZHSJRathna Silviya Lodi0Xiuwen Jia1Peng Yang2Chune Peng3Xiaodan Dong4Jiandong Han5Xiaofei Liu6Luzhang Wan7Lizeng Peng8Key Laboratory of Agro-Products Processing Technology of Shandong Province, Key Laboratory of Novel Food Resources Processing Ministry of Agriculture, Institute of Food & Nutrition Science and Technology, Shandong Academy of Agricultural SciencesKey Laboratory of Agro-Products Processing Technology of Shandong Province, Key Laboratory of Novel Food Resources Processing Ministry of Agriculture, Institute of Food & Nutrition Science and Technology, Shandong Academy of Agricultural SciencesState Key Laboratory of Nutrient Use and Management, Key Laboratory of Wastes Matrix Utilization, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Environment, Shandong Academy of Agricultural SciencesKey Laboratory of Agro-Products Processing Technology of Shandong Province, Key Laboratory of Novel Food Resources Processing Ministry of Agriculture, Institute of Food & Nutrition Science and Technology, Shandong Academy of Agricultural SciencesKey Laboratory of Agro-Products Processing Technology of Shandong Province, Key Laboratory of Novel Food Resources Processing Ministry of Agriculture, Institute of Food & Nutrition Science and Technology, Shandong Academy of Agricultural SciencesState Key Laboratory of Nutrient Use and Management, Key Laboratory of Wastes Matrix Utilization, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Environment, Shandong Academy of Agricultural SciencesJinan Asia Pharmaceutical Technology Co., Ltd.State Key Laboratory of Nutrient Use and Management, Key Laboratory of Wastes Matrix Utilization, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Environment, Shandong Academy of Agricultural SciencesKey Laboratory of Agro-Products Processing Technology of Shandong Province, Key Laboratory of Novel Food Resources Processing Ministry of Agriculture, Institute of Food & Nutrition Science and Technology, Shandong Academy of Agricultural SciencesAbstract Trametes sanguinea belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, Trametes sanguinea ZHSJ (T. sanguinea ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their annotations. T. sanguinea ZHSJ genome is 41.3243 Mb in length with a total of 135 contigs with N50 contig length 2.8138 Mb. A total of 10886 genes of T. sanguinea ZHSJ were annotated. Further, RNA sequencing and assembly represented 11861 genes, out of these 10,507 genes were annotated with four annotation databases. Moreover, denovo prediction annotation performed by Funannotate represented 12,268 coding genes and simple sequence repeats (SSR) prediction represented total 1,242 SSR and among them 707 were trinucleotide repeat motifs.https://doi.org/10.1038/s41597-025-05798-9 |
| spellingShingle | Rathna Silviya Lodi Xiuwen Jia Peng Yang Chune Peng Xiaodan Dong Jiandong Han Xiaofei Liu Luzhang Wan Lizeng Peng Whole genome sequencing and annotations of Trametes sanguinea ZHSJ Scientific Data |
| title | Whole genome sequencing and annotations of Trametes sanguinea ZHSJ |
| title_full | Whole genome sequencing and annotations of Trametes sanguinea ZHSJ |
| title_fullStr | Whole genome sequencing and annotations of Trametes sanguinea ZHSJ |
| title_full_unstemmed | Whole genome sequencing and annotations of Trametes sanguinea ZHSJ |
| title_short | Whole genome sequencing and annotations of Trametes sanguinea ZHSJ |
| title_sort | whole genome sequencing and annotations of trametes sanguinea zhsj |
| url | https://doi.org/10.1038/s41597-025-05798-9 |
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