QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation
The analysis and visualisation of antimicrobial resistance (AMR) surveillance data is a crucial challenge, especially in high-burden, low-middle-income countries. We describe the design, development, integration, and implementation of the Quick Analysis of Antimicrobial Patterns and Trends (QAAPT) t...
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Frontiers Media S.A.
2025-02-01
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| Series: | Frontiers in Microbiology |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fmicb.2025.1513454/full |
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| author | Mohammad Julhas Sujan Sanjay Gautam Ahmed Taha Aboushady Adam Clark Sooyoung Kwon Hea Sun Joh Marianne Holm John Stelling Florian Marks Florian Marks Florian Marks Florian Marks Nimesh Poudyal |
| author_facet | Mohammad Julhas Sujan Sanjay Gautam Ahmed Taha Aboushady Adam Clark Sooyoung Kwon Hea Sun Joh Marianne Holm John Stelling Florian Marks Florian Marks Florian Marks Florian Marks Nimesh Poudyal |
| author_sort | Mohammad Julhas Sujan |
| collection | DOAJ |
| description | The analysis and visualisation of antimicrobial resistance (AMR) surveillance data is a crucial challenge, especially in high-burden, low-middle-income countries. We describe the design, development, integration, and implementation of the Quick Analysis of Antimicrobial Patterns and Trends (QAAPT) tool for AMR data analysis and visualisation. The QAAPT tool was created by the Capturing Data on Antimicrobial Resistance Patterns and Trends in Use in Regions of Asia project, led by the International Vaccine Institute (IVI). This open-source web-based tool/application generates statistical and visual outputs of AMR data, offers data curation options, and can be integrated with laboratory information management systems. The QAAPT tool is user-friendly and is operable by someone with limited expertise in software or programming. As a part of the project, the tool was used to analyse data from 72 laboratories across 7 Asian countries. In this study, we present the technical aspects of tool development and highlight implementation outcomes for analysing and generating visual reports from more than 2.37 million highly heterogeneous antimicrobial susceptibility test data points. |
| format | Article |
| id | doaj-art-f2c71a3f655e4d4e9218fa9a54a736d3 |
| institution | Kabale University |
| issn | 1664-302X |
| language | English |
| publishDate | 2025-02-01 |
| publisher | Frontiers Media S.A. |
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| series | Frontiers in Microbiology |
| spelling | doaj-art-f2c71a3f655e4d4e9218fa9a54a736d32025-02-07T06:49:34ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2025-02-011610.3389/fmicb.2025.15134541513454QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisationMohammad Julhas Sujan0Sanjay Gautam1Ahmed Taha Aboushady2Adam Clark3Sooyoung Kwon4Hea Sun Joh5Marianne Holm6John Stelling7Florian Marks8Florian Marks9Florian Marks10Florian Marks11Nimesh Poudyal12Department of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United StatesBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United StatesDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United StatesDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaCambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge, United KingdomHeidelberg Institute of Global Health, University of Heidelberg, Heidelberg, GermanyMadagascar Institute for Vaccine Research, University of Antananarivo, Antananarivo, MadagascarDepartment of Antimocrobial Resistance, International Vaccine Institute, Seoul, Republic of KoreaThe analysis and visualisation of antimicrobial resistance (AMR) surveillance data is a crucial challenge, especially in high-burden, low-middle-income countries. We describe the design, development, integration, and implementation of the Quick Analysis of Antimicrobial Patterns and Trends (QAAPT) tool for AMR data analysis and visualisation. The QAAPT tool was created by the Capturing Data on Antimicrobial Resistance Patterns and Trends in Use in Regions of Asia project, led by the International Vaccine Institute (IVI). This open-source web-based tool/application generates statistical and visual outputs of AMR data, offers data curation options, and can be integrated with laboratory information management systems. The QAAPT tool is user-friendly and is operable by someone with limited expertise in software or programming. As a part of the project, the tool was used to analyse data from 72 laboratories across 7 Asian countries. In this study, we present the technical aspects of tool development and highlight implementation outcomes for analysing and generating visual reports from more than 2.37 million highly heterogeneous antimicrobial susceptibility test data points.https://www.frontiersin.org/articles/10.3389/fmicb.2025.1513454/fullantimicrobial resistancedata analysisdata visualisationsurveillancelow-middle-income countries |
| spellingShingle | Mohammad Julhas Sujan Sanjay Gautam Ahmed Taha Aboushady Adam Clark Sooyoung Kwon Hea Sun Joh Marianne Holm John Stelling Florian Marks Florian Marks Florian Marks Florian Marks Nimesh Poudyal QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation Frontiers in Microbiology antimicrobial resistance data analysis data visualisation surveillance low-middle-income countries |
| title | QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation |
| title_full | QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation |
| title_fullStr | QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation |
| title_full_unstemmed | QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation |
| title_short | QAAPT: an interoperable web-based open-source tool for antimicrobial resistance data analysis and visualisation |
| title_sort | qaapt an interoperable web based open source tool for antimicrobial resistance data analysis and visualisation |
| topic | antimicrobial resistance data analysis data visualisation surveillance low-middle-income countries |
| url | https://www.frontiersin.org/articles/10.3389/fmicb.2025.1513454/full |
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