Light-dependent modulation of protein localization and function in living bacteria cells

Abstract Most bacteria lack membrane-enclosed organelles and rely on macromolecular scaffolds at different subcellular locations to recruit proteins for specific functions. Here, we demonstrate that the optogenetic CRY2-CIB1 system from Arabidopsis thaliana can be used to rapidly direct proteins to...

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Main Authors: Ryan McQuillen, Amilcar J. Perez, Xinxing Yang, Christopher H. Bohrer, Erika L. Smith, Sylvia Chareyre, Ho-Ching Tiffany Tsui, Kevin E. Bruce, Yin Mon Hla, Joshua W. McCausland, Malcolm E. Winkler, Erin D. Goley, Kumaran S. Ramamurthi, Jie Xiao
Format: Article
Language:English
Published: Nature Portfolio 2024-12-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-024-54974-9
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author Ryan McQuillen
Amilcar J. Perez
Xinxing Yang
Christopher H. Bohrer
Erika L. Smith
Sylvia Chareyre
Ho-Ching Tiffany Tsui
Kevin E. Bruce
Yin Mon Hla
Joshua W. McCausland
Malcolm E. Winkler
Erin D. Goley
Kumaran S. Ramamurthi
Jie Xiao
author_facet Ryan McQuillen
Amilcar J. Perez
Xinxing Yang
Christopher H. Bohrer
Erika L. Smith
Sylvia Chareyre
Ho-Ching Tiffany Tsui
Kevin E. Bruce
Yin Mon Hla
Joshua W. McCausland
Malcolm E. Winkler
Erin D. Goley
Kumaran S. Ramamurthi
Jie Xiao
author_sort Ryan McQuillen
collection DOAJ
description Abstract Most bacteria lack membrane-enclosed organelles and rely on macromolecular scaffolds at different subcellular locations to recruit proteins for specific functions. Here, we demonstrate that the optogenetic CRY2-CIB1 system from Arabidopsis thaliana can be used to rapidly direct proteins to different subcellular locations with varying efficiencies in live Escherichia coli cells, including the nucleoid, the cell pole, the membrane, and the midcell division plane. Such light-induced re-localization can be used to rapidly inhibit cytokinesis in actively dividing E. coli cells. We further show that CRY2-CIBN binding kinetics can be modulated by green light, adding a new dimension of control to the system. Finally, we test this optogenetic system in three additional bacterial species, Bacillus subtilis, Caulobacter crescentus, and Streptococcus pneumoniae, providing important considerations for this system’s applicability in bacterial cell biology.
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spelling doaj-art-f2380f756e734a39bc8b2a4768ba67c82025-01-05T12:35:54ZengNature PortfolioNature Communications2041-17232024-12-0115111510.1038/s41467-024-54974-9Light-dependent modulation of protein localization and function in living bacteria cellsRyan McQuillen0Amilcar J. Perez1Xinxing Yang2Christopher H. Bohrer3Erika L. Smith4Sylvia Chareyre5Ho-Ching Tiffany Tsui6Kevin E. Bruce7Yin Mon Hla8Joshua W. McCausland9Malcolm E. Winkler10Erin D. Goley11Kumaran S. Ramamurthi12Jie Xiao13Department of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineDepartment of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineDepartment of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineDepartment of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineDepartment of Biological Chemistry, The Johns Hopkins University School of MedicineLaboratory of Molecular Biology, National Cancer Institute, National Institutes of HealthDepartment of Biology, Indiana University BloomingtonDepartment of Biology, Indiana University BloomingtonDepartment of Biology, Indiana University BloomingtonDepartment of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineDepartment of Biology, Indiana University BloomingtonDepartment of Biological Chemistry, The Johns Hopkins University School of MedicineLaboratory of Molecular Biology, National Cancer Institute, National Institutes of HealthDepartment of Biophysics & Biophysical Chemistry, The Johns Hopkins University School of MedicineAbstract Most bacteria lack membrane-enclosed organelles and rely on macromolecular scaffolds at different subcellular locations to recruit proteins for specific functions. Here, we demonstrate that the optogenetic CRY2-CIB1 system from Arabidopsis thaliana can be used to rapidly direct proteins to different subcellular locations with varying efficiencies in live Escherichia coli cells, including the nucleoid, the cell pole, the membrane, and the midcell division plane. Such light-induced re-localization can be used to rapidly inhibit cytokinesis in actively dividing E. coli cells. We further show that CRY2-CIBN binding kinetics can be modulated by green light, adding a new dimension of control to the system. Finally, we test this optogenetic system in three additional bacterial species, Bacillus subtilis, Caulobacter crescentus, and Streptococcus pneumoniae, providing important considerations for this system’s applicability in bacterial cell biology.https://doi.org/10.1038/s41467-024-54974-9
spellingShingle Ryan McQuillen
Amilcar J. Perez
Xinxing Yang
Christopher H. Bohrer
Erika L. Smith
Sylvia Chareyre
Ho-Ching Tiffany Tsui
Kevin E. Bruce
Yin Mon Hla
Joshua W. McCausland
Malcolm E. Winkler
Erin D. Goley
Kumaran S. Ramamurthi
Jie Xiao
Light-dependent modulation of protein localization and function in living bacteria cells
Nature Communications
title Light-dependent modulation of protein localization and function in living bacteria cells
title_full Light-dependent modulation of protein localization and function in living bacteria cells
title_fullStr Light-dependent modulation of protein localization and function in living bacteria cells
title_full_unstemmed Light-dependent modulation of protein localization and function in living bacteria cells
title_short Light-dependent modulation of protein localization and function in living bacteria cells
title_sort light dependent modulation of protein localization and function in living bacteria cells
url https://doi.org/10.1038/s41467-024-54974-9
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