MAFcounter: an efficient tool for counting the occurrences of k-mers in MAF files

Abstract Motivation With the rapid expansion of large-scale biological datasets, DNA and protein sequence alignments have become essential for comparative genomics and proteomics. These alignments facilitate the exploration of sequence similarity patterns, providing valuable insights into sequence c...

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Bibliographic Details
Main Authors: Michail Patsakis, Kimonas Provatas, Aris Karatzikos, Charalampos Koilakos, Ioannis Mouratidis, Ilias Georgakopoulos-Soares
Format: Article
Language:English
Published: BMC 2025-05-01
Series:BMC Bioinformatics
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Online Access:https://doi.org/10.1186/s12859-025-06172-7
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