Pleistocene chronology and history of hominins and fauna at Denisova Cave

Abstract Denisova Cave in southern Siberia is the only site known to have been occupied by Denisovans, Neanderthals and modern humans. The cave consists of three chambers (Main, East and South), with the archaeological assemblages and remains of hominins, fauna and flora recovered from Main and East...

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Main Authors: Zenobia Jacobs, Elena I. Zavala, Bo Li, Kieran O’Gorman, Michael V. Shunkov, Maxim B. Kozlikin, Anatoly P. Derevianko, Vladimir A. Uliyanov, Paul Goldberg, Alexander K. Agadjanian, Sergei K. Vasiliev, Frank Brink, Stéphane Peyrégne, Viviane Slon, Svante Pääbo, Janet Kelso, Matthias Meyer, Richard G. Roberts
Format: Article
Language:English
Published: Nature Portfolio 2025-05-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-60140-6
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author Zenobia Jacobs
Elena I. Zavala
Bo Li
Kieran O’Gorman
Michael V. Shunkov
Maxim B. Kozlikin
Anatoly P. Derevianko
Vladimir A. Uliyanov
Paul Goldberg
Alexander K. Agadjanian
Sergei K. Vasiliev
Frank Brink
Stéphane Peyrégne
Viviane Slon
Svante Pääbo
Janet Kelso
Matthias Meyer
Richard G. Roberts
author_facet Zenobia Jacobs
Elena I. Zavala
Bo Li
Kieran O’Gorman
Michael V. Shunkov
Maxim B. Kozlikin
Anatoly P. Derevianko
Vladimir A. Uliyanov
Paul Goldberg
Alexander K. Agadjanian
Sergei K. Vasiliev
Frank Brink
Stéphane Peyrégne
Viviane Slon
Svante Pääbo
Janet Kelso
Matthias Meyer
Richard G. Roberts
author_sort Zenobia Jacobs
collection DOAJ
description Abstract Denisova Cave in southern Siberia is the only site known to have been occupied by Denisovans, Neanderthals and modern humans. The cave consists of three chambers (Main, East and South), with the archaeological assemblages and remains of hominins, fauna and flora recovered from Main and East Chambers being the most thoroughly investigated to date. Here we report the results of analyses of the Palaeolithic artefacts, faunal remains and hominin and mammalian mitochondrial (mt) DNA recovered from renewed excavations in South Chamber. We construct a calendar-year time scale for the stratified Pleistocene deposits from optical dating of the sediments. The timing of hominin occupation and major turnovers in the mtDNA of Denisovans and large mammals largely accords with the patterns detected in Main and East Chambers. Time gaps in those sequences are partly filled by the South Chamber data and the sediment DNA record of Denisovans after 80,000 years ago is more than doubled in size. We combine the sediment dating and DNA records for all three chambers to reveal the whole-of-cave history of this unique site and the climatic conditions experienced by hominins and fauna over the past 300,000 years, including potential changes in habitat suitability for Denisovans and Neanderthals.
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spelling doaj-art-efd03d216d4d47e9966043d3b4f339cd2025-08-20T03:48:19ZengNature PortfolioNature Communications2041-17232025-05-0116111910.1038/s41467-025-60140-6Pleistocene chronology and history of hominins and fauna at Denisova CaveZenobia Jacobs0Elena I. Zavala1Bo Li2Kieran O’Gorman3Michael V. Shunkov4Maxim B. Kozlikin5Anatoly P. Derevianko6Vladimir A. Uliyanov7Paul Goldberg8Alexander K. Agadjanian9Sergei K. Vasiliev10Frank Brink11Stéphane Peyrégne12Viviane Slon13Svante Pääbo14Janet Kelso15Matthias Meyer16Richard G. Roberts17Centre for Archaeological Science, School of Science, University of WollongongMax Planck Institute for Evolutionary AnthropologyCentre for Archaeological Science, School of Science, University of WollongongCentre for Archaeological Science, School of Science, University of WollongongInstitute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian BranchInstitute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian BranchInstitute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian BranchLomonosov Moscow State UniversityCentre for Archaeological Science, School of Science, University of WollongongBorissiak Paleontological Institute, Russian Academy of SciencesInstitute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian BranchCentre for Advanced Microscopy, Australian National UniversityMax Planck Institute for Evolutionary AnthropologyMax Planck Institute for Evolutionary AnthropologyMax Planck Institute for Evolutionary AnthropologyMax Planck Institute for Evolutionary AnthropologyMax Planck Institute for Evolutionary AnthropologyCentre for Archaeological Science, School of Science, University of WollongongAbstract Denisova Cave in southern Siberia is the only site known to have been occupied by Denisovans, Neanderthals and modern humans. The cave consists of three chambers (Main, East and South), with the archaeological assemblages and remains of hominins, fauna and flora recovered from Main and East Chambers being the most thoroughly investigated to date. Here we report the results of analyses of the Palaeolithic artefacts, faunal remains and hominin and mammalian mitochondrial (mt) DNA recovered from renewed excavations in South Chamber. We construct a calendar-year time scale for the stratified Pleistocene deposits from optical dating of the sediments. The timing of hominin occupation and major turnovers in the mtDNA of Denisovans and large mammals largely accords with the patterns detected in Main and East Chambers. Time gaps in those sequences are partly filled by the South Chamber data and the sediment DNA record of Denisovans after 80,000 years ago is more than doubled in size. We combine the sediment dating and DNA records for all three chambers to reveal the whole-of-cave history of this unique site and the climatic conditions experienced by hominins and fauna over the past 300,000 years, including potential changes in habitat suitability for Denisovans and Neanderthals.https://doi.org/10.1038/s41467-025-60140-6
spellingShingle Zenobia Jacobs
Elena I. Zavala
Bo Li
Kieran O’Gorman
Michael V. Shunkov
Maxim B. Kozlikin
Anatoly P. Derevianko
Vladimir A. Uliyanov
Paul Goldberg
Alexander K. Agadjanian
Sergei K. Vasiliev
Frank Brink
Stéphane Peyrégne
Viviane Slon
Svante Pääbo
Janet Kelso
Matthias Meyer
Richard G. Roberts
Pleistocene chronology and history of hominins and fauna at Denisova Cave
Nature Communications
title Pleistocene chronology and history of hominins and fauna at Denisova Cave
title_full Pleistocene chronology and history of hominins and fauna at Denisova Cave
title_fullStr Pleistocene chronology and history of hominins and fauna at Denisova Cave
title_full_unstemmed Pleistocene chronology and history of hominins and fauna at Denisova Cave
title_short Pleistocene chronology and history of hominins and fauna at Denisova Cave
title_sort pleistocene chronology and history of hominins and fauna at denisova cave
url https://doi.org/10.1038/s41467-025-60140-6
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