Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model

Abstract Background Dengue encephalitis, a severe neurological complication of dengue virus infection, is increasingly recognized for its rising incidence and significant public health burden. Despite its growing prevalence, the underlying mechanisms and effective therapeutic strategies remain poorl...

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Main Authors: Minyue Qiu, Lixin Zhao, Xiaojia Li, Yipei Fan, Minchi Liu, Dong Hua, Yunkai Zhu, Yinyin Liang, Yu Zhang, Wen Xiao, Xiaofeng Xu, Jintao Li
Format: Article
Language:English
Published: BMC 2025-03-01
Series:Journal of Neuroinflammation
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Online Access:https://doi.org/10.1186/s12974-025-03383-w
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author Minyue Qiu
Lixin Zhao
Xiaojia Li
Yipei Fan
Minchi Liu
Dong Hua
Yunkai Zhu
Yinyin Liang
Yu Zhang
Wen Xiao
Xiaofeng Xu
Jintao Li
author_facet Minyue Qiu
Lixin Zhao
Xiaojia Li
Yipei Fan
Minchi Liu
Dong Hua
Yunkai Zhu
Yinyin Liang
Yu Zhang
Wen Xiao
Xiaofeng Xu
Jintao Li
author_sort Minyue Qiu
collection DOAJ
description Abstract Background Dengue encephalitis, a severe neurological complication of dengue virus infection, is increasingly recognized for its rising incidence and significant public health burden. Despite its growing prevalence, the underlying mechanisms and effective therapeutic strategies remain poorly understood. Methods Cellular atlas of dengue encephalitis was determined by single-nucleus RNA sequencing. Viral load of dengue virus and the level of cytokines expression was detected by RT-qPCR. The target cells of dengue virus were verified by immunofluorescence. The cytotoxic effect of CD8+ T cell was determined by flow cytometry, immunofluorescence, in vivo CD8+ T cell depletion, adoptive transfer and CCK-8-based cell viability assay. Axonal and synaptic reduction induced by dengue virus infection was demonstrated by RT-qPCR, Western blot, transmission electron microscope and immunofluorescence. Finally, motor and sensory functions of mice were detected by open field test and hot plate test, respectively. Results In this study, we utilized single-nucleus RNA sequencing on brain tissues from a dengue-infected murine model to construct a comprehensive cellular atlas of dengue encephalitis. Our findings identify neurons, particularly inhibitory GABAergic subtypes, as the primary targets of dengue virus. Additionally, immune cell infiltration was observed, contributing to significant neurological damage. Comprehensive analyses of cell-cell communication, combined with CD8+ T cell depletion and transfer restoration experiments, have elucidated the critical role of CD8+ T cells in triggering encephalitis through their interaction with neurons. These cells infiltrate the brain from peripheral circulation, interact with neurons, and induce damage of synapse and axon, accompanied by neurological dysfunction. Conclusion We defined cellular atlas of dengue encephalitis in mouse model and identified the primary target neuron of dengue virus. In addition, we demonstrated the significant cytotoxic effect of CD8+ T cell, which leads to apoptosis of neuron and neurological dysfunction of mice. Our study provides a molecular and cellular framework for understanding dengue encephalitis through advanced sequencing technologies. The insights gained serve as a foundation for future investigations into its pathogenesis and the development of targeted therapeutic approaches.
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series Journal of Neuroinflammation
spelling doaj-art-e9d1c76b780148929702d7c1d6abb3be2025-08-20T03:05:45ZengBMCJournal of Neuroinflammation1742-20942025-03-0122112410.1186/s12974-025-03383-wDecoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse modelMinyue Qiu0Lixin Zhao1Xiaojia Li2Yipei Fan3Minchi Liu4Dong Hua5Yunkai Zhu6Yinyin Liang7Yu Zhang8Wen Xiao9Xiaofeng Xu10Jintao Li11Department of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityDepartment of Biosafety, School of Basic Medicine, Army Medical UniversityAbstract Background Dengue encephalitis, a severe neurological complication of dengue virus infection, is increasingly recognized for its rising incidence and significant public health burden. Despite its growing prevalence, the underlying mechanisms and effective therapeutic strategies remain poorly understood. Methods Cellular atlas of dengue encephalitis was determined by single-nucleus RNA sequencing. Viral load of dengue virus and the level of cytokines expression was detected by RT-qPCR. The target cells of dengue virus were verified by immunofluorescence. The cytotoxic effect of CD8+ T cell was determined by flow cytometry, immunofluorescence, in vivo CD8+ T cell depletion, adoptive transfer and CCK-8-based cell viability assay. Axonal and synaptic reduction induced by dengue virus infection was demonstrated by RT-qPCR, Western blot, transmission electron microscope and immunofluorescence. Finally, motor and sensory functions of mice were detected by open field test and hot plate test, respectively. Results In this study, we utilized single-nucleus RNA sequencing on brain tissues from a dengue-infected murine model to construct a comprehensive cellular atlas of dengue encephalitis. Our findings identify neurons, particularly inhibitory GABAergic subtypes, as the primary targets of dengue virus. Additionally, immune cell infiltration was observed, contributing to significant neurological damage. Comprehensive analyses of cell-cell communication, combined with CD8+ T cell depletion and transfer restoration experiments, have elucidated the critical role of CD8+ T cells in triggering encephalitis through their interaction with neurons. These cells infiltrate the brain from peripheral circulation, interact with neurons, and induce damage of synapse and axon, accompanied by neurological dysfunction. Conclusion We defined cellular atlas of dengue encephalitis in mouse model and identified the primary target neuron of dengue virus. In addition, we demonstrated the significant cytotoxic effect of CD8+ T cell, which leads to apoptosis of neuron and neurological dysfunction of mice. Our study provides a molecular and cellular framework for understanding dengue encephalitis through advanced sequencing technologies. The insights gained serve as a foundation for future investigations into its pathogenesis and the development of targeted therapeutic approaches.https://doi.org/10.1186/s12974-025-03383-wDengue encephalitisSingle-nucleus RNA sequencingGABAergic neuronsImmune cell infiltrationCD8+ T cellsNeurological impairment
spellingShingle Minyue Qiu
Lixin Zhao
Xiaojia Li
Yipei Fan
Minchi Liu
Dong Hua
Yunkai Zhu
Yinyin Liang
Yu Zhang
Wen Xiao
Xiaofeng Xu
Jintao Li
Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
Journal of Neuroinflammation
Dengue encephalitis
Single-nucleus RNA sequencing
GABAergic neurons
Immune cell infiltration
CD8+ T cells
Neurological impairment
title Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
title_full Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
title_fullStr Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
title_full_unstemmed Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
title_short Decoding dengue’s neurological assault: insights from single-cell CNS analysis in an immunocompromised mouse model
title_sort decoding dengue s neurological assault insights from single cell cns analysis in an immunocompromised mouse model
topic Dengue encephalitis
Single-nucleus RNA sequencing
GABAergic neurons
Immune cell infiltration
CD8+ T cells
Neurological impairment
url https://doi.org/10.1186/s12974-025-03383-w
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