MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder

Abstract Complete expression loss of S-methyl-5′-thioadenosine phosphorylase (MTAP) is caused by homozygous 9p21 deletion and results in a critical vulnerability of cancer cells towards drugs targeting multiple different pathways. MTAP deficiency is common in urothelial cancer, but data on its intra...

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Main Authors: Natalia Gorbokon, Katharina Teljuk, Viktor Reiswich, Florian Lutz, Sebastian Dwertmann Rico, Clara Lühr, Christian Bernreuther, Yaryna Klos Al Bunni, Cosima Völkel, Henning Plage, Maximilian Lennartz, Margit Fisch, Sarah Minner, Ronald Simon, Guido Sauter, Henrik Zecha, Stefan Steurer, Thorsten Schlomm, Tatjana Vlajnic, Lukas Bubendorf, Michael Rink, Martina Kluth, Florian Viehweger, Morton Freytag
Format: Article
Language:English
Published: Nature Portfolio 2025-07-01
Series:Scientific Reports
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Online Access:https://doi.org/10.1038/s41598-025-10157-0
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author Natalia Gorbokon
Katharina Teljuk
Viktor Reiswich
Florian Lutz
Sebastian Dwertmann Rico
Clara Lühr
Christian Bernreuther
Yaryna Klos Al Bunni
Cosima Völkel
Henning Plage
Maximilian Lennartz
Margit Fisch
Sarah Minner
Ronald Simon
Guido Sauter
Henrik Zecha
Stefan Steurer
Thorsten Schlomm
Tatjana Vlajnic
Lukas Bubendorf
Michael Rink
Martina Kluth
Florian Viehweger
Morton Freytag
author_facet Natalia Gorbokon
Katharina Teljuk
Viktor Reiswich
Florian Lutz
Sebastian Dwertmann Rico
Clara Lühr
Christian Bernreuther
Yaryna Klos Al Bunni
Cosima Völkel
Henning Plage
Maximilian Lennartz
Margit Fisch
Sarah Minner
Ronald Simon
Guido Sauter
Henrik Zecha
Stefan Steurer
Thorsten Schlomm
Tatjana Vlajnic
Lukas Bubendorf
Michael Rink
Martina Kluth
Florian Viehweger
Morton Freytag
author_sort Natalia Gorbokon
collection DOAJ
description Abstract Complete expression loss of S-methyl-5′-thioadenosine phosphorylase (MTAP) is caused by homozygous 9p21 deletion and results in a critical vulnerability of cancer cells towards drugs targeting multiple different pathways. MTAP deficiency is common in urothelial cancer, but data on its intratumoral heterogeneity—a potential obstacle for targeted therapies—are lacking. To study the heterogeneity of MTAP expression loss and 9p21 deletions in advanced primary urothelial cancers of the urinary bladder, a tissue microarray (TMA) composed of five different tissue spots from different tissue blocks of 105 pT2-4 urothelial carcinomas was analyzed by immunohistochemistry (IHC) and fluorescence in-situ hybridization (FISH). In addition, all tumor containing blocks (1–15, average 6.4) from 41 consecutive pT2-4 carcinomas were analyzed by IHC. Complete absence of MTAP staining (MTAP deficiency) was seen in 34.2% of 385 interpretable TMA samples. All 80 samples with a complete MTAP expression loss and FISH data had a homozygous 9p21 deletion while there were no cases with homozygous deletions within 178 samples with retained MTAP expression (100% FISH/IHC concordance). On a patient level, there was a homogeneous MTAP deficiency in 33%, a heterogeneous MTAP deficiency in 1%, and a retained MTAP expression in 66% of the 98 tumors with at least three interpretable TMA samples. Among 41 consecutive pT2-4 carcinomas from which 1–15 (average 6.4) whole sections were analyzed, MTAP was homogeneously deficient in 34.1%, heterogeneously deficient in 4.9% and homogeneously retained in 61.0%. MTAP deficiency is mostly homogeneous in advanced urothelial carcinoma. MTAP IHC is a near perfect surrogate for the detection of homozygous 9p21 (MTAP) deletions. Drugs targeting MTAP deficiency could be highly useful in a relevant subset of invasive urothelial bladder cancers.
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spelling doaj-art-e654a3713f1b4ab2b679cf0d5938413d2025-08-20T04:03:01ZengNature PortfolioScientific Reports2045-23222025-07-0115111110.1038/s41598-025-10157-0MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladderNatalia Gorbokon0Katharina Teljuk1Viktor Reiswich2Florian Lutz3Sebastian Dwertmann Rico4Clara Lühr5Christian Bernreuther6Yaryna Klos Al Bunni7Cosima Völkel8Henning Plage9Maximilian Lennartz10Margit Fisch11Sarah Minner12Ronald Simon13Guido Sauter14Henrik Zecha15Stefan Steurer16Thorsten Schlomm17Tatjana Vlajnic18Lukas Bubendorf19Michael Rink20Martina Kluth21Florian Viehweger22Morton Freytag23Institute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfDepartment of Urology, Charité BerlinInstitute of Pathology, University Medical Center Hamburg-EppendorfDepartment of Urology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfDepartment of Urology, Charité BerlinInstitute of Pathology, University Medical Center Hamburg-EppendorfDepartment of Urology, Charité BerlinInstitute of Pathology, University Hospital BaselInstitute of Pathology, University Hospital BaselDepartment of Urology, MarienkrankenhausInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfInstitute of Pathology, University Medical Center Hamburg-EppendorfAbstract Complete expression loss of S-methyl-5′-thioadenosine phosphorylase (MTAP) is caused by homozygous 9p21 deletion and results in a critical vulnerability of cancer cells towards drugs targeting multiple different pathways. MTAP deficiency is common in urothelial cancer, but data on its intratumoral heterogeneity—a potential obstacle for targeted therapies—are lacking. To study the heterogeneity of MTAP expression loss and 9p21 deletions in advanced primary urothelial cancers of the urinary bladder, a tissue microarray (TMA) composed of five different tissue spots from different tissue blocks of 105 pT2-4 urothelial carcinomas was analyzed by immunohistochemistry (IHC) and fluorescence in-situ hybridization (FISH). In addition, all tumor containing blocks (1–15, average 6.4) from 41 consecutive pT2-4 carcinomas were analyzed by IHC. Complete absence of MTAP staining (MTAP deficiency) was seen in 34.2% of 385 interpretable TMA samples. All 80 samples with a complete MTAP expression loss and FISH data had a homozygous 9p21 deletion while there were no cases with homozygous deletions within 178 samples with retained MTAP expression (100% FISH/IHC concordance). On a patient level, there was a homogeneous MTAP deficiency in 33%, a heterogeneous MTAP deficiency in 1%, and a retained MTAP expression in 66% of the 98 tumors with at least three interpretable TMA samples. Among 41 consecutive pT2-4 carcinomas from which 1–15 (average 6.4) whole sections were analyzed, MTAP was homogeneously deficient in 34.1%, heterogeneously deficient in 4.9% and homogeneously retained in 61.0%. MTAP deficiency is mostly homogeneous in advanced urothelial carcinoma. MTAP IHC is a near perfect surrogate for the detection of homozygous 9p21 (MTAP) deletions. Drugs targeting MTAP deficiency could be highly useful in a relevant subset of invasive urothelial bladder cancers.https://doi.org/10.1038/s41598-025-10157-0MTAP deficiencyFISHIHCTissue microarrayUrothelial bladder cancerTumor heterogeneity
spellingShingle Natalia Gorbokon
Katharina Teljuk
Viktor Reiswich
Florian Lutz
Sebastian Dwertmann Rico
Clara Lühr
Christian Bernreuther
Yaryna Klos Al Bunni
Cosima Völkel
Henning Plage
Maximilian Lennartz
Margit Fisch
Sarah Minner
Ronald Simon
Guido Sauter
Henrik Zecha
Stefan Steurer
Thorsten Schlomm
Tatjana Vlajnic
Lukas Bubendorf
Michael Rink
Martina Kluth
Florian Viehweger
Morton Freytag
MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
Scientific Reports
MTAP deficiency
FISH
IHC
Tissue microarray
Urothelial bladder cancer
Tumor heterogeneity
title MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
title_full MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
title_fullStr MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
title_full_unstemmed MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
title_short MTAP deficiency is highly homogeneous in advanced, muscle-invasive urothelial carcinoma of the urinary bladder
title_sort mtap deficiency is highly homogeneous in advanced muscle invasive urothelial carcinoma of the urinary bladder
topic MTAP deficiency
FISH
IHC
Tissue microarray
Urothelial bladder cancer
Tumor heterogeneity
url https://doi.org/10.1038/s41598-025-10157-0
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