Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance

Abstract Background Coccidiosis, caused by Eimeria parasites, is a major enteric disease in poultry, significantly impacting animal health, production performance, and welfare. This disease imposes a substantial economic burden, costing the global poultry industry up to $13 billion annually. However...

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Main Authors: Chace Broadwater, Jiaqing Guo, Jing Liu, Isabel Tobin, Melanie A. Whitmore, Michael G. Kaiser, Susan J. Lamont, Guolong Zhang
Format: Article
Language:English
Published: BMC 2025-05-01
Series:Journal of Animal Science and Biotechnology
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Online Access:https://doi.org/10.1186/s40104-025-01202-z
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author Chace Broadwater
Jiaqing Guo
Jing Liu
Isabel Tobin
Melanie A. Whitmore
Michael G. Kaiser
Susan J. Lamont
Guolong Zhang
author_facet Chace Broadwater
Jiaqing Guo
Jing Liu
Isabel Tobin
Melanie A. Whitmore
Michael G. Kaiser
Susan J. Lamont
Guolong Zhang
author_sort Chace Broadwater
collection DOAJ
description Abstract Background Coccidiosis, caused by Eimeria parasites, is a major enteric disease in poultry, significantly impacting animal health, production performance, and welfare. This disease imposes a substantial economic burden, costing the global poultry industry up to $13 billion annually. However, effective mitigation strategies for coccidiosis remain elusive. While different chicken breeds exhibit varying resistance to coccidiosis, no commensal bacteria have been directly linked to this resistance. Methods To assess relative resistance of different breeds to coccidiosis, 10-day-old Fayoumi M5.1, Leghorn Ghs6, and Cobb chickens were challenged with 50,000 sporulated Eimeria maxima oocysts or mock-infected. Body weight changes, small intestinal lesions, and fecal oocyst shedding were evaluated on d 17. Ileal and cecal digesta were collected from individual animals on d 17 and subjected to microbiome analysis using 16S rRNA gene sequencing.  Results Fayoumi M5.1 chickens showed the lowest growth retardation, intestinal lesion score, fecal oocyst shedding, and pathobiont proliferation compared to Ghs6 and Cobb chickens. The intestinal microbiota of M5.1 chickens also differed markedly from the other two breeds under both healthy and coccidiosis conditions. Notably, group A Lactobacillus and Ligilactobacillus salivarius were the least prevalent in both the ileum and cecum of healthy M5.1 chickens, but became highly enriched and comparable to Ghs6 and Cobb chickens in response to coccidiosis. Conversely, Weissella, Staphylococcus gallinarum, and Enterococcus durans/hirae were more abundant in the ileum of healthy M5.1 chickens than in the other two breeds. Despite being reduced by Eimeria, these bacteria retained higher abundance in M5.1 chickens compared to the other breeds. Conclusions Fayoumi M5.1 chickens exhibit greater resistance to coccidiosis than Leghorn Ghs6 layers and Cobb broilers. Several commensal bacteria, including group A Lactobacillus, L. salivarius, Weissella, S. gallinarum, and E. durans/hirae, are differentially enriched in Fayoumi M5.1 chickens with strong correlation with coccidiosis resistance. These bacteria hold potential as probiotics for coccidiosis mitigation.
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spelling doaj-art-e328fbccff2d4d498570dec661b78c9c2025-08-20T02:15:05ZengBMCJournal of Animal Science and Biotechnology2049-18912025-05-0116111410.1186/s40104-025-01202-zBreed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistanceChace Broadwater0Jiaqing Guo1Jing Liu2Isabel Tobin3Melanie A. Whitmore4Michael G. Kaiser5Susan J. Lamont6Guolong Zhang7Department of Animal and Food Sciences, Oklahoma State UniversityDepartment of Animal and Food Sciences, Oklahoma State UniversityDepartment of Animal and Food Sciences, Oklahoma State UniversityDepartment of Animal and Food Sciences, Oklahoma State UniversityDepartment of Animal and Food Sciences, Oklahoma State UniversityDepartment of Animal Science, Iowa State UniversityDepartment of Animal Science, Iowa State UniversityDepartment of Animal and Food Sciences, Oklahoma State UniversityAbstract Background Coccidiosis, caused by Eimeria parasites, is a major enteric disease in poultry, significantly impacting animal health, production performance, and welfare. This disease imposes a substantial economic burden, costing the global poultry industry up to $13 billion annually. However, effective mitigation strategies for coccidiosis remain elusive. While different chicken breeds exhibit varying resistance to coccidiosis, no commensal bacteria have been directly linked to this resistance. Methods To assess relative resistance of different breeds to coccidiosis, 10-day-old Fayoumi M5.1, Leghorn Ghs6, and Cobb chickens were challenged with 50,000 sporulated Eimeria maxima oocysts or mock-infected. Body weight changes, small intestinal lesions, and fecal oocyst shedding were evaluated on d 17. Ileal and cecal digesta were collected from individual animals on d 17 and subjected to microbiome analysis using 16S rRNA gene sequencing.  Results Fayoumi M5.1 chickens showed the lowest growth retardation, intestinal lesion score, fecal oocyst shedding, and pathobiont proliferation compared to Ghs6 and Cobb chickens. The intestinal microbiota of M5.1 chickens also differed markedly from the other two breeds under both healthy and coccidiosis conditions. Notably, group A Lactobacillus and Ligilactobacillus salivarius were the least prevalent in both the ileum and cecum of healthy M5.1 chickens, but became highly enriched and comparable to Ghs6 and Cobb chickens in response to coccidiosis. Conversely, Weissella, Staphylococcus gallinarum, and Enterococcus durans/hirae were more abundant in the ileum of healthy M5.1 chickens than in the other two breeds. Despite being reduced by Eimeria, these bacteria retained higher abundance in M5.1 chickens compared to the other breeds. Conclusions Fayoumi M5.1 chickens exhibit greater resistance to coccidiosis than Leghorn Ghs6 layers and Cobb broilers. Several commensal bacteria, including group A Lactobacillus, L. salivarius, Weissella, S. gallinarum, and E. durans/hirae, are differentially enriched in Fayoumi M5.1 chickens with strong correlation with coccidiosis resistance. These bacteria hold potential as probiotics for coccidiosis mitigation.https://doi.org/10.1186/s40104-025-01202-zCoccidiosisEimeriaEnterococcusFayoumiLactic acid bacteriaLactobacillus
spellingShingle Chace Broadwater
Jiaqing Guo
Jing Liu
Isabel Tobin
Melanie A. Whitmore
Michael G. Kaiser
Susan J. Lamont
Guolong Zhang
Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
Journal of Animal Science and Biotechnology
Coccidiosis
Eimeria
Enterococcus
Fayoumi
Lactic acid bacteria
Lactobacillus
title Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
title_full Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
title_fullStr Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
title_full_unstemmed Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
title_short Breed-specific responses to coccidiosis in chickens: identification of intestinal bacteria linked to disease resistance
title_sort breed specific responses to coccidiosis in chickens identification of intestinal bacteria linked to disease resistance
topic Coccidiosis
Eimeria
Enterococcus
Fayoumi
Lactic acid bacteria
Lactobacillus
url https://doi.org/10.1186/s40104-025-01202-z
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