Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea

ABSTRACT The Beibu Gulf, a vital region for marine biodiversity and aquaculture, is increasingly affected by nutrient‐driven ecological shifts in the phytoplankton community. This study combined morphology and eDNA metabarcoding (18S rDNA V4) to investigate phytoplankton diversity and environmental...

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Main Authors: Shalini Thevarajan, Pengfei Sun, Pengbin Wang, Jie Xu, Jie Chen, Yongyu Tan, Junjie Zheng, Mengmeng Tong
Format: Article
Language:English
Published: Wiley 2025-04-01
Series:Ecology and Evolution
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Online Access:https://doi.org/10.1002/ece3.71207
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author Shalini Thevarajan
Pengfei Sun
Pengbin Wang
Jie Xu
Jie Chen
Yongyu Tan
Junjie Zheng
Mengmeng Tong
author_facet Shalini Thevarajan
Pengfei Sun
Pengbin Wang
Jie Xu
Jie Chen
Yongyu Tan
Junjie Zheng
Mengmeng Tong
author_sort Shalini Thevarajan
collection DOAJ
description ABSTRACT The Beibu Gulf, a vital region for marine biodiversity and aquaculture, is increasingly affected by nutrient‐driven ecological shifts in the phytoplankton community. This study combined morphology and eDNA metabarcoding (18S rDNA V4) to investigate phytoplankton diversity and environmental drivers during summer and winter in the Beibu Gulf. Metabarcoding detected 3.5 times more phytoplankton species, contributing to higher species diversity and richness than morphology. Metabarcoding identified 200 phytoplankton genera from eight phyla, while morphology only identified 49 genera from six phyla. Both methods revealed different dominant phytoplankton communities. Bacillariophyta and Haptophyta dominated the phytoplankton community based on morphology, in summer and winter, respectively; meanwhile, Dinophyta dominated in both seasons under metabarcoding due to their high 18S rDNA copy number. Altogether, 83 HAB and/or toxic species were identified, among which 10 were dominant, suggesting a high risk of HAB outbreaks in the Beibu Gulf. Phytoplankton abundance increased from south to north and west to east in both seasons, following the high input of dissolved inorganic nitrogen (DIN) and silicate. Excess ammonium input can promote the dominance of Scrippsiella trochoidea and Heterocapsa circularisquama, positioning them as emerging HAB species, while excess DIN caused extreme phosphorus limitation and favored the dominance of Phaeocystis globosa in the Beibu Gulf. This study provided a comprehensive description of the influence of environmental drivers on the phytoplankton community in the Beibu Gulf.
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spelling doaj-art-dddfd34fa5ac4c16a865a506f1aeb39a2025-08-20T02:35:33ZengWileyEcology and Evolution2045-77582025-04-01154n/an/a10.1002/ece3.71207Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China SeaShalini Thevarajan0Pengfei Sun1Pengbin Wang2Jie Xu3Jie Chen4Yongyu Tan5Junjie Zheng6Mengmeng Tong7Ocean College Zhejiang University Zhoushan ChinaKey Laboratory of Tropical Marine Ecosystem and Bioresource, Fourth Institute of Oceanography Ministry of Natural Resources Beihai ChinaOcean College Zhejiang University Zhoushan ChinaCentre for Regional Oceans & Department of Ocean Science and Technology, Faculty of Science and Technology University of Macau Macau ChinaKey Laboratory of Tropical Marine Ecosystem and Bioresource, Fourth Institute of Oceanography Ministry of Natural Resources Beihai ChinaKey Laboratory of Tropical Marine Ecosystem and Bioresource, Fourth Institute of Oceanography Ministry of Natural Resources Beihai ChinaKey Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography Ministry of Natural Resources Hangzhou ChinaOcean College Zhejiang University Zhoushan ChinaABSTRACT The Beibu Gulf, a vital region for marine biodiversity and aquaculture, is increasingly affected by nutrient‐driven ecological shifts in the phytoplankton community. This study combined morphology and eDNA metabarcoding (18S rDNA V4) to investigate phytoplankton diversity and environmental drivers during summer and winter in the Beibu Gulf. Metabarcoding detected 3.5 times more phytoplankton species, contributing to higher species diversity and richness than morphology. Metabarcoding identified 200 phytoplankton genera from eight phyla, while morphology only identified 49 genera from six phyla. Both methods revealed different dominant phytoplankton communities. Bacillariophyta and Haptophyta dominated the phytoplankton community based on morphology, in summer and winter, respectively; meanwhile, Dinophyta dominated in both seasons under metabarcoding due to their high 18S rDNA copy number. Altogether, 83 HAB and/or toxic species were identified, among which 10 were dominant, suggesting a high risk of HAB outbreaks in the Beibu Gulf. Phytoplankton abundance increased from south to north and west to east in both seasons, following the high input of dissolved inorganic nitrogen (DIN) and silicate. Excess ammonium input can promote the dominance of Scrippsiella trochoidea and Heterocapsa circularisquama, positioning them as emerging HAB species, while excess DIN caused extreme phosphorus limitation and favored the dominance of Phaeocystis globosa in the Beibu Gulf. This study provided a comprehensive description of the influence of environmental drivers on the phytoplankton community in the Beibu Gulf.https://doi.org/10.1002/ece3.7120718S rDNABeibu gulfenvironmental drivermetabarcodingmorphologyphytoplankton
spellingShingle Shalini Thevarajan
Pengfei Sun
Pengbin Wang
Jie Xu
Jie Chen
Yongyu Tan
Junjie Zheng
Mengmeng Tong
Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
Ecology and Evolution
18S rDNA
Beibu gulf
environmental driver
metabarcoding
morphology
phytoplankton
title Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
title_full Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
title_fullStr Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
title_full_unstemmed Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
title_short Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea
title_sort morphological and molecular diversity of phytoplankton in beibu gulf northern south china sea
topic 18S rDNA
Beibu gulf
environmental driver
metabarcoding
morphology
phytoplankton
url https://doi.org/10.1002/ece3.71207
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