Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies

Non-reduced peptide mapping provides essential data for characterizing therapeutic monoclonal antibodies by isolating disulfide connections between specific cysteines. However, conventional digestive strategies used throughout the biopharmaceutical industry have been shown to cause unintentional rea...

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Main Authors: Andrew Kleinberg, Yuan Mao, Ning Li
Format: Article
Language:English
Published: Taylor & Francis Group 2024-12-01
Series:mAbs
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Online Access:https://www.tandfonline.com/doi/10.1080/19420862.2024.2420805
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author Andrew Kleinberg
Yuan Mao
Ning Li
author_facet Andrew Kleinberg
Yuan Mao
Ning Li
author_sort Andrew Kleinberg
collection DOAJ
description Non-reduced peptide mapping provides essential data for characterizing therapeutic monoclonal antibodies by isolating disulfide connections between specific cysteines. However, conventional digestive strategies used throughout the biopharmaceutical industry have been shown to cause unintentional rearrangement of disulfide connections (disulfide scrambling), thus generating connectivity profiles that do not accurately represent the protein being analyzed. Common misconceptions (e.g. avoiding basic-pH digestion to prevent disulfide scrambling) have led to the development of alternative reagents and conditions that can alleviate this issue, but yield problematic digestion profiles. Herein, we systematically and comprehensively examine the primary considerations for accurate non-reduced peptide mapping, and provide effective, practical solutions to minimize undesired behavior while still yielding high-quality digests. Additionally, we present a method that exploits intentional disulfide scrambling as a reference tool to demonstrate the robustness of our proposed strategies. We also introduce maleimide as a cysteine-alkylating reagent and demonstrate its benefits over industry-leading analogs such as N-ethylmaleimide in terms of compatibility with regulatory reports.
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spelling doaj-art-d63c0735261e40d287f7b79802a4f2ca2025-08-20T03:22:19ZengTaylor & Francis GroupmAbs1942-08621942-08702024-12-0116110.1080/19420862.2024.2420805Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodiesAndrew Kleinberg0Yuan Mao1Ning Li2Department of Analytical Chemistry, Regeneron Pharmaceuticals, Inc, Tarrytown, NY, USADepartment of Analytical Chemistry, Regeneron Pharmaceuticals, Inc, Tarrytown, NY, USADepartment of Analytical Chemistry, Regeneron Pharmaceuticals, Inc, Tarrytown, NY, USANon-reduced peptide mapping provides essential data for characterizing therapeutic monoclonal antibodies by isolating disulfide connections between specific cysteines. However, conventional digestive strategies used throughout the biopharmaceutical industry have been shown to cause unintentional rearrangement of disulfide connections (disulfide scrambling), thus generating connectivity profiles that do not accurately represent the protein being analyzed. Common misconceptions (e.g. avoiding basic-pH digestion to prevent disulfide scrambling) have led to the development of alternative reagents and conditions that can alleviate this issue, but yield problematic digestion profiles. Herein, we systematically and comprehensively examine the primary considerations for accurate non-reduced peptide mapping, and provide effective, practical solutions to minimize undesired behavior while still yielding high-quality digests. Additionally, we present a method that exploits intentional disulfide scrambling as a reference tool to demonstrate the robustness of our proposed strategies. We also introduce maleimide as a cysteine-alkylating reagent and demonstrate its benefits over industry-leading analogs such as N-ethylmaleimide in terms of compatibility with regulatory reports.https://www.tandfonline.com/doi/10.1080/19420862.2024.2420805Acidic digestioncysteine alkylationdisulfide scramblingnon-reduced peptide mappingthiol-disulfide exchangeβ-elimination
spellingShingle Andrew Kleinberg
Yuan Mao
Ning Li
Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
mAbs
Acidic digestion
cysteine alkylation
disulfide scrambling
non-reduced peptide mapping
thiol-disulfide exchange
β-elimination
title Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
title_full Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
title_fullStr Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
title_full_unstemmed Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
title_short Practical solutions for overcoming artificial disulfide scrambling in the non-reduced peptide mapping characterization of monoclonal antibodies
title_sort practical solutions for overcoming artificial disulfide scrambling in the non reduced peptide mapping characterization of monoclonal antibodies
topic Acidic digestion
cysteine alkylation
disulfide scrambling
non-reduced peptide mapping
thiol-disulfide exchange
β-elimination
url https://www.tandfonline.com/doi/10.1080/19420862.2024.2420805
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