Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris

Abstract Extracellular vesicles (EVs) are nanosized lipid bilayer particles released by various cellular organisms that carry an array of bioactive molecules. EVs have diagnostic potential, as they play a role in intercellular interspecies communication, and could be applied in drug delivery. In con...

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Main Authors: Tina Vida Plavec, Kristina Žagar Soderžnik, Giulia Della Pelle, Špela Zupančič, Robert Vidmar, Aleš Berlec
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Scientific Reports
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Online Access:https://doi.org/10.1038/s41598-025-86492-z
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author Tina Vida Plavec
Kristina Žagar Soderžnik
Giulia Della Pelle
Špela Zupančič
Robert Vidmar
Aleš Berlec
author_facet Tina Vida Plavec
Kristina Žagar Soderžnik
Giulia Della Pelle
Špela Zupančič
Robert Vidmar
Aleš Berlec
author_sort Tina Vida Plavec
collection DOAJ
description Abstract Extracellular vesicles (EVs) are nanosized lipid bilayer particles released by various cellular organisms that carry an array of bioactive molecules. EVs have diagnostic potential, as they play a role in intercellular interspecies communication, and could be applied in drug delivery. In contrast to mammalian cell-derived EVs, the study of EVs from bacteria, particularly Gram-positive bacteria, received less research attention. This study aimed to investigate the production of EVs by lactic acid bacterium Lactococcus cremoris NZ9000 and to examine the impact of recombinant protein expression on their formation and protein content. Four different recombinant proteins were expressed in L. cremoris NZ9000, in different forms of expression and combinations, and the produced EVs were isolated using the standard ultracentrifugation method. The presence of vesicular structures (50–200 nm) in the samples was confirmed by transmission electron microscopy and by flow cytometry using membrane-specific stain. Mass spectrometry analyses confirmed the presence of recombinant proteins in the EVs fraction, with amounts ranging from 13.17 to 100%, highlighting their significant incorporation into the vesicles, together with intrinsic L. cremoris NZ9000 proteins that were either more abundant in the cytoplasm (ribosomal proteins, metabolic enzymes) or present in the membrane. The presence of the most abundant lactococcal proteins in EVs fraction suggests that protein cargo-loading of EVs in L. cremoris NZ9000 is not regulated. However, our data suggests that L. cremoris NZ9000 genetically engineered to express recombinant proteins can produce EVs containing these proteins in scalable manner. As L. cremoris NZ9000 is considered safe bacterium, EVs from L. cremoris NZ9000 could have several advantages over EVs from other bacteria, implying possible biotechnological applications, e.g. in therapeutic protein delivery.
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spelling doaj-art-d418236f97aa4ceab7fbc1b83879ab122025-01-19T12:17:05ZengNature PortfolioScientific Reports2045-23222025-01-0115111210.1038/s41598-025-86492-zIncorporation of recombinant proteins into extracellular vesicles by Lactococcus cremorisTina Vida Plavec0Kristina Žagar Soderžnik1Giulia Della Pelle2Špela Zupančič3Robert Vidmar4Aleš Berlec5Department of Biotechnology, Jožef Stefan InstituteDepartment for Nanostructured Materials, Jožef Stefan InstituteDepartment for Nanostructured Materials, Jožef Stefan InstituteFaculty of Pharmacy, University of LjubljanaDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan InstituteDepartment of Biotechnology, Jožef Stefan InstituteAbstract Extracellular vesicles (EVs) are nanosized lipid bilayer particles released by various cellular organisms that carry an array of bioactive molecules. EVs have diagnostic potential, as they play a role in intercellular interspecies communication, and could be applied in drug delivery. In contrast to mammalian cell-derived EVs, the study of EVs from bacteria, particularly Gram-positive bacteria, received less research attention. This study aimed to investigate the production of EVs by lactic acid bacterium Lactococcus cremoris NZ9000 and to examine the impact of recombinant protein expression on their formation and protein content. Four different recombinant proteins were expressed in L. cremoris NZ9000, in different forms of expression and combinations, and the produced EVs were isolated using the standard ultracentrifugation method. The presence of vesicular structures (50–200 nm) in the samples was confirmed by transmission electron microscopy and by flow cytometry using membrane-specific stain. Mass spectrometry analyses confirmed the presence of recombinant proteins in the EVs fraction, with amounts ranging from 13.17 to 100%, highlighting their significant incorporation into the vesicles, together with intrinsic L. cremoris NZ9000 proteins that were either more abundant in the cytoplasm (ribosomal proteins, metabolic enzymes) or present in the membrane. The presence of the most abundant lactococcal proteins in EVs fraction suggests that protein cargo-loading of EVs in L. cremoris NZ9000 is not regulated. However, our data suggests that L. cremoris NZ9000 genetically engineered to express recombinant proteins can produce EVs containing these proteins in scalable manner. As L. cremoris NZ9000 is considered safe bacterium, EVs from L. cremoris NZ9000 could have several advantages over EVs from other bacteria, implying possible biotechnological applications, e.g. in therapeutic protein delivery.https://doi.org/10.1038/s41598-025-86492-zExtracellular vesiclesLactococcus cremorisRecombinant proteinDelivery vehicle
spellingShingle Tina Vida Plavec
Kristina Žagar Soderžnik
Giulia Della Pelle
Špela Zupančič
Robert Vidmar
Aleš Berlec
Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
Scientific Reports
Extracellular vesicles
Lactococcus cremoris
Recombinant protein
Delivery vehicle
title Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
title_full Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
title_fullStr Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
title_full_unstemmed Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
title_short Incorporation of recombinant proteins into extracellular vesicles by Lactococcus cremoris
title_sort incorporation of recombinant proteins into extracellular vesicles by lactococcus cremoris
topic Extracellular vesicles
Lactococcus cremoris
Recombinant protein
Delivery vehicle
url https://doi.org/10.1038/s41598-025-86492-z
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