Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS
Abstract Acute respiratory distress syndrome (ARDS) is one of the most common and serious complications in the development of sepsis. Endoplasmic reticulum stress (ERS) plays an important role in the pathophysiologic process of sepsis-associated ARDS. The aim of this study was to identify and analyz...
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Nature Portfolio
2025-08-01
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| author | Ling Gao Tingting Liu Xiaoyan Li |
| author_facet | Ling Gao Tingting Liu Xiaoyan Li |
| author_sort | Ling Gao |
| collection | DOAJ |
| description | Abstract Acute respiratory distress syndrome (ARDS) is one of the most common and serious complications in the development of sepsis. Endoplasmic reticulum stress (ERS) plays an important role in the pathophysiologic process of sepsis-associated ARDS. The aim of this study was to identify and analyze hub genes related to ERS in sepsis-associated ARDS using bioinformatics and machine learning algorithms, which may serve as diagnostic markers and therapeutic targets. Based on the GSE32707 dataset from the GEO database, differentially expressed genes (DEGs) between patients with sepsis-associated acute respiratory distress syndrome (ARDS) and healthy controls were identified. A comprehensive evaluation was performed by integrating functional enrichment analysis, immune cell infiltration analysis, and weighted gene co-expression network analysis (WGCNA). By intersecting DEGs, key WGCNA module genes, and ERS-related genes(ERGs), ERS-associated differential genes in sepsis-related ARDS were obtained. Subsequently, three machine learning algorithms—least absolute shrinkage and selection operator (LASSO), random forest (RF), and support vector machine (SVM)—were used to further screen for hub ERS hub genes. The diagnostic value of these hub genes was assessed using receiver operating characteristic (ROC) curve analysis. Finally, their expression levels were validated in clinical samples using RT-qPCR. A total of 438 DEGs and five hub genes—STAT3, HSPB1, YWHAQ, LCN2, and SGK1—were identified.Diagnostic performance analysis demonstrated that all five genes had favorable discriminatory power, indicating their potential clinical utility.Further validation in clinical samples confirmed the reliability of the bioinformatics analysis. RT-qPCR results showed that STAT3 was significantly upregulated, while YWHAQ was significantly downregulated in sepsis-associated ARDS samples compared to healthy controls, with both differences reaching statistical significance. In conclusion, STAT3 and YWHAQ, as ERS-related key genes, not only play pivotal roles in sepsis-associated ARDS but also hold promise as diagnostic biomarkers and potential therapeutic targets. |
| format | Article |
| id | doaj-art-c8cb4f6fcbe74449b4612671c2a05850 |
| institution | Kabale University |
| issn | 2045-2322 |
| language | English |
| publishDate | 2025-08-01 |
| publisher | Nature Portfolio |
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| spelling | doaj-art-c8cb4f6fcbe74449b4612671c2a058502025-08-24T11:19:15ZengNature PortfolioScientific Reports2045-23222025-08-0115111110.1038/s41598-025-16644-8Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDSLing Gao0Tingting Liu1Xiaoyan Li2Department of Respiratory and Critical Care Medicine, Third Hospital of Shanxi Medical University Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Tongji Shanxi HospitalDepartment of Respiratory and Critical Care Medicine, Third Hospital of Shanxi Medical University Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Tongji Shanxi HospitalDepartment of Pulmonary and Critical Care Medicine, Shanghai Pudong New Area Zhoupu Hospital, Shanghai University of Medicine & Health Sciences Affiliated Zhoupu HospitalAbstract Acute respiratory distress syndrome (ARDS) is one of the most common and serious complications in the development of sepsis. Endoplasmic reticulum stress (ERS) plays an important role in the pathophysiologic process of sepsis-associated ARDS. The aim of this study was to identify and analyze hub genes related to ERS in sepsis-associated ARDS using bioinformatics and machine learning algorithms, which may serve as diagnostic markers and therapeutic targets. Based on the GSE32707 dataset from the GEO database, differentially expressed genes (DEGs) between patients with sepsis-associated acute respiratory distress syndrome (ARDS) and healthy controls were identified. A comprehensive evaluation was performed by integrating functional enrichment analysis, immune cell infiltration analysis, and weighted gene co-expression network analysis (WGCNA). By intersecting DEGs, key WGCNA module genes, and ERS-related genes(ERGs), ERS-associated differential genes in sepsis-related ARDS were obtained. Subsequently, three machine learning algorithms—least absolute shrinkage and selection operator (LASSO), random forest (RF), and support vector machine (SVM)—were used to further screen for hub ERS hub genes. The diagnostic value of these hub genes was assessed using receiver operating characteristic (ROC) curve analysis. Finally, their expression levels were validated in clinical samples using RT-qPCR. A total of 438 DEGs and five hub genes—STAT3, HSPB1, YWHAQ, LCN2, and SGK1—were identified.Diagnostic performance analysis demonstrated that all five genes had favorable discriminatory power, indicating their potential clinical utility.Further validation in clinical samples confirmed the reliability of the bioinformatics analysis. RT-qPCR results showed that STAT3 was significantly upregulated, while YWHAQ was significantly downregulated in sepsis-associated ARDS samples compared to healthy controls, with both differences reaching statistical significance. In conclusion, STAT3 and YWHAQ, as ERS-related key genes, not only play pivotal roles in sepsis-associated ARDS but also hold promise as diagnostic biomarkers and potential therapeutic targets.https://doi.org/10.1038/s41598-025-16644-8Endoplasmic reticulum stressSepsis-associated ARDSBioinformaticsMachine learning |
| spellingShingle | Ling Gao Tingting Liu Xiaoyan Li Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS Scientific Reports Endoplasmic reticulum stress Sepsis-associated ARDS Bioinformatics Machine learning |
| title | Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS |
| title_full | Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS |
| title_fullStr | Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS |
| title_full_unstemmed | Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS |
| title_short | Identification and analysis of the endoplasmic reticulum stress hub genes in sepsis-associated ARDS |
| title_sort | identification and analysis of the endoplasmic reticulum stress hub genes in sepsis associated ards |
| topic | Endoplasmic reticulum stress Sepsis-associated ARDS Bioinformatics Machine learning |
| url | https://doi.org/10.1038/s41598-025-16644-8 |
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