Structural basis of a microbial trimethylamine transporter
ABSTRACT Trimethylamine (TMA), a simple trace biogenic amine resulting from the decomposition of proteins and other macromolecules, is ubiquitous in nature. It is found in the human gut as well as in various terrestrial and marine ecosystems. While the role of TMA in promoting cardiovascular disease...
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American Society for Microbiology
2025-01-01
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| Online Access: | https://journals.asm.org/doi/10.1128/mbio.01914-24 |
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| author | Chao Gao Hai-Tao Ding Kang Li Hai-Yan Cao Ning Wang Zeng-Tian Gu Qing Wang Mei-Ling Sun Xiu-Lan Chen Yin Chen Yu-Zhong Zhang Hui-Hui Fu Chun-Yang Li |
| author_facet | Chao Gao Hai-Tao Ding Kang Li Hai-Yan Cao Ning Wang Zeng-Tian Gu Qing Wang Mei-Ling Sun Xiu-Lan Chen Yin Chen Yu-Zhong Zhang Hui-Hui Fu Chun-Yang Li |
| author_sort | Chao Gao |
| collection | DOAJ |
| description | ABSTRACT Trimethylamine (TMA), a simple trace biogenic amine resulting from the decomposition of proteins and other macromolecules, is ubiquitous in nature. It is found in the human gut as well as in various terrestrial and marine ecosystems. While the role of TMA in promoting cardiovascular diseases and depolarizing olfactory sensory neurons in humans has only recently been explored, many microbes are well known for their ability to utilize TMA as a carbon, nitrogen, and energy source. Here, we report the first structure of a TMA transporter, TmaT, originally identified from a marine bacterium. TmaT is a member of the betaine-choline-carnitine transporter family, and we show that TmaT is an Na+/TMA symporter, which possessed high specificity and binding affinity toward TMA. Furthermore, the structures of TmaT and two TmaT-TMA complexes were solved by cryo-EM. TmaT forms a homotrimer structure in solution. Each TmaT monomer has 12 transmembrane helices, and the TMA transport channel is formed by a four-helix bundle. TMA can move between different aromatic boxes, which provides the structural basis of TmaT importing TMA. When TMA is bound in location I, residues Trp146, Trp151, Tyr154, and Trp326 form an aromatic box to accommodate TMA. Moreover, Met105 also plays an important role in the binding of TMA. When TMA is transferred to location II, it is bound in the aromatic box formed by Trp325, Trp326, and Trp329. Based on our results, we proposed the TMA transport mechanism by TmaT. This study provides novel insights into TMA transport across biological membranes.IMPORTANCEThe volatile trimethylamine (TMA) plays an important role in promoting cardiovascular diseases and depolarizing olfactory sensory neurons in humans and serves as a key nutrient source for a variety of ubiquitous marine microbes. While the TMA transporter TmaT has been identified from a marine bacterium, the structure of TmaT and the molecular mechanism involved in TMA transport remain unclear. In this study, we elucidated the high-resolution cryo-EM structures of TmaT and TmaT-TMA complexes and revealed the TMA binding and transport mechanisms by structural and biochemical analyses. The results advance our understanding of the TMA transport processes across biological membranes. |
| format | Article |
| id | doaj-art-c0efaeef442d4690872447993d731034 |
| institution | Kabale University |
| issn | 2150-7511 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | American Society for Microbiology |
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| series | mBio |
| spelling | doaj-art-c0efaeef442d4690872447993d7310342025-01-08T14:00:38ZengAmerican Society for MicrobiologymBio2150-75112025-01-0116110.1128/mbio.01914-24Structural basis of a microbial trimethylamine transporterChao Gao0Hai-Tao Ding1Kang Li2Hai-Yan Cao3Ning Wang4Zeng-Tian Gu5Qing Wang6Mei-Ling Sun7Xiu-Lan Chen8Yin Chen9Yu-Zhong Zhang10Hui-Hui Fu11Chun-Yang Li12State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaAntarctic Great Wall Ecology National Observation and Research Station, Polar Research Institute of China, Ministry of Natural Resources, Shanghai, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaMOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, ChinaABSTRACT Trimethylamine (TMA), a simple trace biogenic amine resulting from the decomposition of proteins and other macromolecules, is ubiquitous in nature. It is found in the human gut as well as in various terrestrial and marine ecosystems. While the role of TMA in promoting cardiovascular diseases and depolarizing olfactory sensory neurons in humans has only recently been explored, many microbes are well known for their ability to utilize TMA as a carbon, nitrogen, and energy source. Here, we report the first structure of a TMA transporter, TmaT, originally identified from a marine bacterium. TmaT is a member of the betaine-choline-carnitine transporter family, and we show that TmaT is an Na+/TMA symporter, which possessed high specificity and binding affinity toward TMA. Furthermore, the structures of TmaT and two TmaT-TMA complexes were solved by cryo-EM. TmaT forms a homotrimer structure in solution. Each TmaT monomer has 12 transmembrane helices, and the TMA transport channel is formed by a four-helix bundle. TMA can move between different aromatic boxes, which provides the structural basis of TmaT importing TMA. When TMA is bound in location I, residues Trp146, Trp151, Tyr154, and Trp326 form an aromatic box to accommodate TMA. Moreover, Met105 also plays an important role in the binding of TMA. When TMA is transferred to location II, it is bound in the aromatic box formed by Trp325, Trp326, and Trp329. Based on our results, we proposed the TMA transport mechanism by TmaT. This study provides novel insights into TMA transport across biological membranes.IMPORTANCEThe volatile trimethylamine (TMA) plays an important role in promoting cardiovascular diseases and depolarizing olfactory sensory neurons in humans and serves as a key nutrient source for a variety of ubiquitous marine microbes. While the TMA transporter TmaT has been identified from a marine bacterium, the structure of TmaT and the molecular mechanism involved in TMA transport remain unclear. In this study, we elucidated the high-resolution cryo-EM structures of TmaT and TmaT-TMA complexes and revealed the TMA binding and transport mechanisms by structural and biochemical analyses. The results advance our understanding of the TMA transport processes across biological membranes.https://journals.asm.org/doi/10.1128/mbio.01914-24TMATMA transportercryo-EM structurebinding mechanismtransport mechanism |
| spellingShingle | Chao Gao Hai-Tao Ding Kang Li Hai-Yan Cao Ning Wang Zeng-Tian Gu Qing Wang Mei-Ling Sun Xiu-Lan Chen Yin Chen Yu-Zhong Zhang Hui-Hui Fu Chun-Yang Li Structural basis of a microbial trimethylamine transporter mBio TMA TMA transporter cryo-EM structure binding mechanism transport mechanism |
| title | Structural basis of a microbial trimethylamine transporter |
| title_full | Structural basis of a microbial trimethylamine transporter |
| title_fullStr | Structural basis of a microbial trimethylamine transporter |
| title_full_unstemmed | Structural basis of a microbial trimethylamine transporter |
| title_short | Structural basis of a microbial trimethylamine transporter |
| title_sort | structural basis of a microbial trimethylamine transporter |
| topic | TMA TMA transporter cryo-EM structure binding mechanism transport mechanism |
| url | https://journals.asm.org/doi/10.1128/mbio.01914-24 |
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