Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade
Abstract The Terminal Fusarium Clade (TFC) is a group in the Nectriaceae family with agricultural and clinical relevance. In recent years, various phylogenies have been presented in the literature, showing disagreement in the topologies, but only a few studies have conducted analyses on the divergen...
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| Format: | Article |
| Language: | English |
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BMC
2024-06-01
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| Series: | IMA Fungus |
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| Online Access: | https://doi.org/10.1186/s43008-024-00147-8 |
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| author | Andrés Felipe Lizcano Salas Jorge Duitama Silvia Restrepo Adriana Marcela Celis Ramírez |
| author_facet | Andrés Felipe Lizcano Salas Jorge Duitama Silvia Restrepo Adriana Marcela Celis Ramírez |
| author_sort | Andrés Felipe Lizcano Salas |
| collection | DOAJ |
| description | Abstract The Terminal Fusarium Clade (TFC) is a group in the Nectriaceae family with agricultural and clinical relevance. In recent years, various phylogenies have been presented in the literature, showing disagreement in the topologies, but only a few studies have conducted analyses on the divergence time scale of the group. Therefore, the evolutionary history of this group is still being determined. This study aimed to understand the evolutionary history of the TFC from a phylogenomic perspective. To achieve this objective, we performed a phylogenomic analysis using the available genomes in GenBank and ran eight different pipelines. We presented a new robust topology of the TFC that differs at some nodes from previous studies. These new relationships allowed us to formulate new hypotheses about the evolutionary history of the TFC. We also inferred new divergence time estimates, which differ from those of previous studies due to topology discordances and taxon sampling. The results suggested an important diversification process in the Neogene period, likely associated with the diversification and predominance of terrestrial ecosystems by angiosperms. In conclusion, we presented a robust time-scale phylogeny that allowed us to formulate new hypotheses regarding the evolutionary history of the TFC. |
| format | Article |
| id | doaj-art-c0269e6b5b7545af9e2b937e06c60f9b |
| institution | Kabale University |
| issn | 2210-6359 |
| language | English |
| publishDate | 2024-06-01 |
| publisher | BMC |
| record_format | Article |
| series | IMA Fungus |
| spelling | doaj-art-c0269e6b5b7545af9e2b937e06c60f9b2025-02-02T05:40:36ZengBMCIMA Fungus2210-63592024-06-0115111110.1186/s43008-024-00147-8Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium CladeAndrés Felipe Lizcano Salas0Jorge Duitama1Silvia Restrepo2Adriana Marcela Celis Ramírez3Grupo de Investigación Celular y Molecular de Microorganismos Patógenos (CeMop), Universidad de los AndesSystems and Computing Engineering Department, Universidad de los AndesChemical Engineering Department, Universidad de los AndesGrupo de Investigación Celular y Molecular de Microorganismos Patógenos (CeMop), Universidad de los AndesAbstract The Terminal Fusarium Clade (TFC) is a group in the Nectriaceae family with agricultural and clinical relevance. In recent years, various phylogenies have been presented in the literature, showing disagreement in the topologies, but only a few studies have conducted analyses on the divergence time scale of the group. Therefore, the evolutionary history of this group is still being determined. This study aimed to understand the evolutionary history of the TFC from a phylogenomic perspective. To achieve this objective, we performed a phylogenomic analysis using the available genomes in GenBank and ran eight different pipelines. We presented a new robust topology of the TFC that differs at some nodes from previous studies. These new relationships allowed us to formulate new hypotheses about the evolutionary history of the TFC. We also inferred new divergence time estimates, which differ from those of previous studies due to topology discordances and taxon sampling. The results suggested an important diversification process in the Neogene period, likely associated with the diversification and predominance of terrestrial ecosystems by angiosperms. In conclusion, we presented a robust time-scale phylogeny that allowed us to formulate new hypotheses regarding the evolutionary history of the TFC.https://doi.org/10.1186/s43008-024-00147-8BisifusariumDiversification timeEvolutionNeocosmosporaNeogeneOrthologs |
| spellingShingle | Andrés Felipe Lizcano Salas Jorge Duitama Silvia Restrepo Adriana Marcela Celis Ramírez Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade IMA Fungus Bisifusarium Diversification time Evolution Neocosmospora Neogene Orthologs |
| title | Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade |
| title_full | Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade |
| title_fullStr | Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade |
| title_full_unstemmed | Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade |
| title_short | Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade |
| title_sort | phylogenomic approaches reveal a robust time scale phylogeny of the terminal fusarium clade |
| topic | Bisifusarium Diversification time Evolution Neocosmospora Neogene Orthologs |
| url | https://doi.org/10.1186/s43008-024-00147-8 |
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